Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq7010 127 2e-24 seq5761 123 2e-23 seq7149 105 7e-18 seq6955 98.7 1e-15 >seq7010 Length=35453 Score = 127 bits (140), Expect = 2e-24 Identities = 158/211 (75%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTC 139614 || ||||||| || || || || || ||||| || ||| | || | || | ||||| Sbjct 8698 ACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGATAGGGTACGTCCA-TCTTC 8756 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 | ||| |||||||| |||||| ||| ||||||||||||||||||||||| ||||| | Sbjct 8757 CAACTGCTTACCAGCGAAGATCAAACGCTGCTGATCGGGAGGTATGCCTTCCTTGTC-CT 8815 Query 139675 GATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCT 139733 || |||| | ||||| | ||| | ||||| | ||||| ||||||| ||| | |||| Sbjct 8816 GAATTTTCGCTTTTACATTTTCGATGGTGTCTGATGGCTCGACCTCAAGGGTGATGGTCT 8875 Query 139734 TGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || || | ||||| ||||| |||||||| Sbjct 8876 TACCAGTGAGAGTTTTCACGAAAATTTGCAT 8906 >seq5761 Length=8615 Score = 123 bits (136), Expect = 2e-23 Identities = 157/211 (74%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTC 139614 || || |||| || || || || || ||||| || ||| | || | || | ||||| Sbjct 307 ACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGATAGGGTACGTCCA-TCTTC 249 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 | ||| |||||||| |||||| ||| ||||||||||||||||||||||| ||||| | Sbjct 248 CAACTGCTTACCAGCGAAGATCAAACGCTGCTGATCGGGAGGTATGCCTTCCTTGTC-CT 190 Query 139675 GATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCT 139733 || |||| | ||||| | ||| | ||||| | ||||| ||||||| ||| | |||| Sbjct 189 GAATTTTCGCTTTTACATTTTCGATGGTGTCTGATGGCTCGACCTCAAGGGTGATGGTCT 130 Query 139734 TGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || || | ||||| ||||| |||||||| Sbjct 129 TACCAGTGAGAGTTTTCACGAAAATTTGCAT 99 >seq7149 Length=218332 Score = 105 bits (116), Expect = 7e-18 Identities = 303/459 (66%), Gaps = 14/459 (3%) Strand=Plus/Minus Query 153345 GCCAGTTTCAAACTGGCATCGAGCGCGGCATGATACACAGTTTCGGAAATCTGTTTGTTC 153404 ||||||| | |||| || ||||| ||| |||| |||||| | ||| | |||||| Sbjct 123361 GCCAGTTCGCAGCTGGTCTCCAGCGCCCCATAGTACAACGTTTCGAATATCCGCTTGTTC 123302 Query 153405 AGTAAAACGGCAGCATC---GCTCACGTACGGTATGCGCAACATGACAAATGCATCGGCC 153461 | ||| || ||||| ||| || | || || |||| || | || || |||||| Sbjct 123301 A---AAAGGGTCGCATCAGGGCTATCGAAGGGCATTCGCATCAAAATGAAGGCGTCGGCC 123245 Query 153462 AAACCTTGAATGCCAATGCCTATGGGACGATGGCGCATATTAGAtttttttGCAGCTTCA 153521 | ||||| || ||||| ||||| || | || ||||| || || || ||||| | Sbjct 123244 AGGCCTTGGATTCCAATCCCTATAGGCCTGTGCCGCATGTTCGAGTTCTTTGCCTCGATT 123185 Query 153522 ACAGGATAGAAATTGCGGTCGATAATTTTATTTAAACTAATCACGACATGTTTCACCACA 153581 || || || || || ||| ||||| || | ||| | | ||| |||| | Sbjct 123184 ACCGGGTAAAAGTTCACGTCAATAATCTTGTCCAAATTCCGCGTGACTACTTTCGTGATG 123125 Query 153582 GAATGCAACAGTTGAAAATCAAACGT--TCCATTAAT--GATATATT--TGTTGACGGCA 153635 | | ||| | || ||||| | ||| | | |||| | |||| || || Sbjct 123124 GCCTTTAACTTCTCGAAGTCAAAACTCTTCCGATCAGCGGATACAAACATGTTAACCGCC 123065 Query 153636 ATCGACGCCAAGTTGCAAACGGCAGTTTCGTCGGGGGCGCAATATTGTACTATTTCCGCA 153695 | || |||| ||||||||||| |||| |||| | |||| || ||||||| Sbjct 123064 ACTGAGGCCAGATTGCAAACGGCGATTTCATCGGCTGAAGTGTATTCAACGATTTCCGTG 123005 Query 153696 CACAAATTGCTGCATTTTATCAGGCCGCAATTACTT-TGATTGCTTTTGCGGTTACAAGC 153754 || | |||||||| |||||| ||| || | ||| || ||| ||||||||| || || Sbjct 123004 CAAAGATTGCTGCTCTTTATCGTGCC-CAGGTTCTTCTGGTTGGATTTGCGGTTGCAGGC 122946 Query 153755 GTCCTTGTATAGCATGTATGGTGTGCCGGTTTCGGCTTG 153793 ||| ||||| |||||||| || || |||||||| |||| Sbjct 122945 GTCTTTGTACAGCATGTAGGGCGTCCCGGTTTCCACTTG 122907 >seq6955 Length=469295 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGA 139608 |||||||| ||||||| ||||||||||| || ||||| || ||| | |||| || | Sbjct 94398 CGCAAAACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCGGAAAGAGTGCGTCCA 94339 Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||||| | || || ||||| | || ||||| ||||| || || || || |||||||| Sbjct 94338 -TCTTCCAATTGCTTTCCAGCGAAAATGAGACGCTGCTGGTCTGGGGGGATTCCTTCTTT 94280 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 ||| |||||| || | | || | |||||| | || ||||| || | || | Sbjct 94279 GTCCTGGATTTTAGCCTTAACATTCTCGATTGTGTCTGAAGGTTCCACTTCCAAAGTGAT 94220 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || || || || ||||| ||||| || ||||| Sbjct 94219 GGTTTTTCCAGTTAATGTTTTCACGAAGATCTGCAT 94184 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| || | ||| || || || | || || |||||||| ||||||||||| Sbjct 94638 CCACCTCTCAATCTCAACACCAAATGCAGAGTGGATTCTTTTTGGATGTTATAATCTGAT 94579 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| | |||||| ||||| | |||| ||||| || || || || Sbjct 94578 AGGGTGCGGCCATCTTCCAACTGTTTGCCAGCGAAAATCAATCGTTGTTGGTCTGGGGGA 94519 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTC-CACT-GTGTCGGTGGGCTCCA 139715 || ||||| ||||| ||| | || | |||| | |||| || | ||||| | || || | Sbjct 94518 ATTCCTTCCTTGTC-TTGAATCTTGGCTTTAAC-GTTCTCAATAGTGTCTGATGGTTCAA 94461 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||| || | || ||||| ||||| || || ||||| || ||||| Sbjct 94460 CCTCAAGTGTGATAGTTTTGCCAGTCAAAGTCTTCACGAAAATCTGCAT 94412 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGT 139610 ||| || || || | || ||||| ||||||||||| || || | |||| || | | Sbjct 95080 CAACACCAAATGCAAAGTGGACTCCTTTTGAATGTTGTAGTCAGATAAAGTGCGTCCA-T 95022 Query 139611 CTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 139670 | || | ||| || || ||| |||||| | ||||| || || || |||||||| |||| Sbjct 95021 CCTCCAACTGCTTTCCTGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCTTCCTTGT 94962 Query 139671 CGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCG 139730 | ||| || || | | || | |||||| | ||| ||||| || | || | || Sbjct 94961 CTTGGATCTTCGCCTTAACGTTCTCAATTGTGTCTGAGGGTTCCACTTCCAAAGTAATCG 94902 Query 139731 TCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | |||||||| || ||||| ||||| |||||||| Sbjct 94901 TTTTGCCGGTTAAAGTTTTCACGAAGATTTGCAT 94868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496013227849600