Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq7343 354 1e-92 seq7149 149 9e-31 >seq7343 Length=933009 Score = 354 bits (392), Expect = 1e-92 Identities = 616/889 (69%), Gaps = 9/889 (1%) Strand=Plus/Minus Query 49658 TAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCA 49717 |||| || | ||| |||||||| || || ||||||||||| || || || || || Sbjct 375286 TAACACCTACTTTCTGGTATTCGCCGACCTTCTTTTCGAAAAAGTTGGTCTTGCCCTC-- 375229 Query 49718 ATG-ATATATTTTC--CATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATC 49774 || | ||||| || ||| ||||| |||||||| || |||||||||| |||| | | | Sbjct 375228 -TGTAGATATTATCGACATAAAATCGAACGGATTAGTGACATTATAAACCTTTTCACAAC 375170 Query 49775 CCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAAT 49834 | | ||| | || || || || ||||||||||| || ||| | | || | Sbjct 375169 CGAGTTCCATTAGCAGTCGGTCAGCCACAAATTCTATGTACTGGCACATGAGCTTGCAGT 375110 Query 49835 TCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCG 49894 |||| || ||||| |||| || || || | | ||||| || ||||| || || | Sbjct 375109 TCATCCCGATAAGACTAACAGGCAGTGCATCCGACAGAAACTCCTGTTCGATAACAACTG 375050 Query 49895 CATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACA 49954 ||||| ||||| | || |||||| ||| || | | || || | Sbjct 375049 CATCTCGAATAATGCCCGTCACTCTTTCTTTGGAGGGTTTTTGAACGAGATAGGAGAATA 374990 Query 49955 TCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACG 50014 ||||| || || || || |||| || |||||||| || ||||| || ||||| | Sbjct 374989 GTAAACAGGCAAAGTCACAATGCAATCCTTCGTCTCTGGAGATCAGTTCATTTGAAAATG 374930 Query 50015 TGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAA 50074 | || |||||||| | ||| || || |||||||| || || || ||||| ||||| | Sbjct 374929 TCAGGCCGGGCATCAAGCCGCGTTTCTTAAGCCAGAAGATCGAAGCAAAGCTGCCAGAGA 374870 Query 50075 AGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG-CG-CTGTC 50132 | || |||||||| || || || || || || | |||||||||| | ||| || || Sbjct 374869 AAAATATTCCTTCGACAGCTGCGAAAGCGACGATTCTCTCTCCAAATGTGGACGTCTTGG 374810 Query 50133 ATGT-ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 50191 | | |||||||| | ||||| || || ||| | ||||||| || | ||||| || | Sbjct 374809 AGCTGATCCACTTAAGCGCCCAGTCCGCTTTCCTCCTTACACAGGGAAGTGTTTCAATTG 374750 Query 50192 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTAT 50251 | ||||| | | |||| | | | ||| | | || || || |||| | || | Sbjct 374749 CGTTAAACAAGAAACTTTTCTGAACAGGATCGCTGATGTAGGTCTCAATCAGCATGCTGT 374690 Query 50252 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 50311 ||||||| || ||||| ||||| ||||| || ||||| || ||||||||||||||||||| Sbjct 374689 ACATTTCAGAGTGAATATTTTCGATGGCTATTTGAAACCCATAGAAACATCTAGCCTCGG 374630 Query 50312 TAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGG 50371 | | |||||||| | |||||||| | | |||||| ||||| || || ||| | Sbjct 374629 TTACTTGCACTTCCTGGCTGAATCGTTCCACAAGATTTTCGTTCACAATGCCATCAGATG 374570 Query 50372 CTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCC 50431 |||| ||||| |||| ||||| ||| || || |||| ||| ||| || ||||||| Sbjct 374569 CTGCGAAAAAGGCCAGCACATGCGATATGAAGTGCCTTTCATTGTTTGTCAGCTTATTCC 374510 Query 50432 AATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 50491 ||| || || |||| ||||| || ||||||||| |||||||| || || || || | Sbjct 374509 AATGATCGAGGTCTTGAGATAGGTCCACTTCTTCCGTGGTCCAAAACGAGGCTTCCGCTT 374450 Query 50492 TTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 50540 | || ||| | | ||||||||| ||||||| || ||||| || ||||| Sbjct 374449 TCTTGTACTTTTCCCAGATGTCTGGATATTGAATGGGGAAGATGACAAA 374401 >seq7149 Length=218332 Score = 149 bits (164), Expect = 9e-31 Identities = 377/570 (66%), Gaps = 5/570 (1%) Strand=Plus/Minus Query 78718 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 78777 ||||| || |||||| || || || || || | | ||| |||||||| ||||| || Sbjct 124026 GTGAACTGGATGGGATTGGCGGCCGGCTTGGTTCTCAAATAATACATTCCGGTTTTCAGG 123967 Query 78778 CCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 78837 || |||| ||||| || ||||| | || | || || | | | | || Sbjct 123966 CCCTTCTTCCAACCGTAAAAGTGCATCGAGGACAGAACGCCGTAGCTGGCTTTTTCAATG 123907 Query 78838 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 78897 ||||| |||| | ||| ||||| ||||| || || || | || || ||||| | | | Sbjct 123906 TGGATGTTCAAACTTTGGCTTTGGTCGATAAATGCGCCGCGATCCGCGGCCATATCGAGG 123847 Query 78898 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 78957 || ||||| | ||||||||| | || || || | | ||| | || || || | | Sbjct 123846 ATGACTTTTTGCGAAATTTCCCACACCGTCTTGTAGATTGCCTTCAAGTCATCAGGGATG 123787 Query 78958 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTC 79014 | | | || || || || || || || || | ||||| ||| || | | Sbjct 123786 TCGGGGATGTTTTGTATCGAGCCGTGATTGGCTATGACTTGGTTCTTCATCGTGTCGTCC 123727 Query 79015 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 79074 || | | ||| ||||| || | | || |||||| |||| || |||||||| || || Sbjct 123726 CACAGTCCTCTTTCGGTCAAGTCCTTGAGAAGATGCTGATTGACCACTTGAAACTCCCCG 123667 Query 79075 GACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCC 79134 |||| ||||||||||||||||| ||||| || || || || || ||| ||||||||| Sbjct 123666 GACAGGACTCTCCGAGTGTAAATGTTACTAGTGTACGGCTCGACGCTTTCGTTATTTCCC 123607 Query 79135 AAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTA-TTTCTAAGACC 79193 | ||||| || ||||| ||||| ||||| || |||| || ||| | ||||| | || Sbjct 123606 AGGATTTGGGCGGTTGAAGCCGTGGGCATTGGGGCCA-GAAGCAACGAGTTTCTTACGCC 123548 Query 79194 GTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATT 79253 | | |||||| | |||| | |||||||||| ||||| | || | |||| Sbjct 123547 ATGTTTGGCGATTTTCGCCTTTAACGCCGCCCAATCCCACAGATCTGTGGGCATGACATC 123488 Query 79254 CCAAAGATCATATTGTAGAATACCGTTACT 79283 ||| | || || || || || || | ||| Sbjct 123487 CCACATGTCGTACTGGAGGATTCCTTGACT 123458 Score = 127 bits (140), Expect = 3e-24 Identities = 211/305 (69%), Gaps = 0/305 (0%) Strand=Plus/Minus Query 80269 TAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 80328 ||||||||||| ||||| ||||| ||| | || || || ||| || | ||| | Sbjct 122239 TAGATGCCCTCAATGCTGTCATCGGGCATCATCAGCAGGAAGCAGGAGGATAGTTGAGGT 122180 Query 80329 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGT 80388 | || | || || || | || ||| |||||||| || | || || |||| Sbjct 122179 CTGGGCGTGGCGGCGTTGAACAGAGTGGGACTGGCGTGCGTGAAGAACTTCTCTGACATG 122120 Query 80389 AGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGC 80448 | ||||| || || || ||||| || ||||| | ||| || || || | ||| | | Sbjct 122119 AAGTTGTAGGTTTCGATTGCTGAATCAATATCTTCTCCATGGATGCCCACTGAGACCCTC 122060 Query 80449 ATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTT 80508 || ||||||||||| || |||||||| ||||| || || |||| | || || | Sbjct 122059 ATCAACATGTGCTGCGGCCTTTCAACAATCTTTCCGTTGATCTTCAGAAGATACGACCTC 122000 Query 80509 TCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAG 80568 |||| ||||| || ||||| |||||||| || || ||||| ||||||||||| |||| Sbjct 121999 TCCAGGGTTTTGAATCCAAAGTAGTTGTACGAGAAATCTCGGTCGTAAATAATGCACGAG 121940 Query 80569 TTGAG 80573 ||||| Sbjct 121939 TTGAG 121935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718195285188320