Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq7343 221 1e-52 >seq7343 Length=933009 Score = 221 bits (244), Expect = 1e-52 Identities = 626/948 (66%), Gaps = 34/948 (4%) Strand=Plus/Minus Query 13505 TATAATATTCAATAAAAACTAAAAATCAACATCTAATGAAAAAACATTATC---GTCTTT 13561 ||||| | || ||| | ||| |||||| |||| | |||||||||||| | | | Sbjct 375351 TATAAAGTACATTAATATCTAGAAATCAGCATCAGTGGTAAAAACATTATCTCCGGCCTC 375292 Query 13562 GTTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTT 13621 | || |||| || | ||| || ||||| | || | ||||| || ||||| || || Sbjct 375291 GCCAG---TAACACCTACTTTCTGGTATTCGCCGACCTTCTTTTCGAAAAAGTTGGTCTT 375235 Query 13622 ACCTTCCAGTGATATATTTTC--CATAAAATCAAATGGATTTATTGACATAA-ACACTTT 13678 || || || | ||||| || ||||||||| || ||||| | |||||| | | || || Sbjct 375234 GCCCTCT-GT-AGATATTATCGACATAAAATCGAACGGATT-AGTGACATTATAAACCTT 375178 Query 13679 ATCACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAA 13738 |||||||| ||||| | ||| | || ||||| | ||| || || || || |||| | Sbjct 375177 TTCACAACCGAGTTCCATTAGCAGTCGGTCAGCCACAAATTCTATGTACTGGCACATGAG 375118 Query 13739 ATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTAT 13798 | || ||||| || || || | ||||| | | || | | ||| || | ||| || Sbjct 375117 CTTGCAGTTCATCCCGATAAGACTAACAGGCAGTGCATCCGACAGAAACTCCTGTTCGAT 375058 Query 13799 AGACACAGCCTCTTTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATTTTA---- 13854 | || || ||| ||||| || | | || || ||||| | ||| | Sbjct 375057 AACAACTGCATCTCGAATAATGCCCGTCACTCTTTCTTT----GGAGGGTTTTTGAACGA 375002 Query 13855 GATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTT 13914 ||| || | |||||| ||||| |||||||| | || || ||||| || |||| Sbjct 375001 GATAGGAGAATAGTAAACAGGCAAAGTCACAATGCAATCCTTCGTCTCTGGAGATCAGTT 374942 Query 13915 CGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAA 13974 | ||||||||||| | || |||||||| || ||||| || | ||| || || | ||||| Sbjct 374941 CATTTGAAAATGTCAGGCCGGGCATCAAGCCGCGTTTCTTAAGCCAGAAGATCGAAGCAA 374882 Query 13975 ATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACG 14034 | || || || |||||||| || || || || || || | | || |||||||| | Sbjct 374881 AGCTGCCAGAGAAAAATATTCCTTCGACAGCTGCGAAAGCGACGATTCTCTCTCCAAATG 374822 Query 14035 ATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCA 14094 | | ||| ||||| || ||||| || | ||| | | | | | | Sbjct 374821 TGGACGTCTTGGAGCTGATCCACTTAAGCGCCCAGTCCGCTTTCCTCCTTACACAGGGAA 374762 Query 14095 TTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAA 14154 ||||||||| || ||||| || | |||| || | ||||| || |||| Sbjct 374761 GTGTTTCAATTGCGTTAAACAAGAAACTTTTCTGAACAGGATCGCTGATGTAGGTCTCAA 374702 Query 14155 TAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGC 14214 | || | ||| |||||||||||||| || ||||| || ||||| ||||| ||||| || | Sbjct 374701 TCAGCATGCTGTACATTTCAGAGTGAATATTTTCGATGGCTATTTGAAACCCATAGAAAC 374642 Query 14215 ATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTA 14274 ||||||| || | ||| |||||| | |||| ||| | | |||||| || || | Sbjct 374641 ATCTAGCCTCGGTTACTTGCACTTCCTGGCTGAATCGTTCCACAAGATTTTCGTTCACAA 374582 Query 14275 TACCATCACTAGCTGCAAAAAATGCCA--ATATGTTTTTAATAAAGTATTGCTCTTCATT 14332 | |||||| ||||| ||||| |||| | ||| | || ||| ||| |||||| Sbjct 374581 TGCCATCAGATGCTGCGAAAAAGGCCAGCACATGCGAT--ATGAAG---TGCCTTTCATT 374527 Query 14333 GT---TGAGTTTTTTCCAATCGGAT--AAATCCTTAGAAAGATCTACTTCATCAACTGTC 14387 || | || || ||||||| ||| | || | ||| || || ||||| || ||| Sbjct 374526 GTTTGTCAGCTTATTCCAAT--GATCGAGGTCTTGAGATAGGTCCACTTCTTCCGTGGTC 374469 Query 14388 CAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATAT 14435 ||||| || | ||||| || ||| || |||| || ||| |||| Sbjct 374468 CAAAACGAGGCTTCCGCTTTCTTGTACTTTTCCCAGATGTCTGGATAT 374421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479678899839200