Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq7343 210 2e-49 >seq7343 Length=933009 Score = 210 bits (232), Expect = 2e-49 Identities = 618/939 (66%), Gaps = 40/939 (4%) Strand=Plus/Minus Query 13305 TAAAAACTAAAAATCAACATCTAATGAAAAAACATTATC---GTCTTTGTTAGAAATAAC 13361 ||| | ||| |||||| |||| | |||||||||||| | | | | || |||| Sbjct 375339 TAATATCTAGAAATCAGCATCAGTGGTAAAAACATTATCTCCGGCCTCGCCAG---TAAC 375283 Query 13362 GCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGA 13421 || | ||| || ||||| | || | ||||| |||||||| || || || || || | Sbjct 375282 ACCTACTTTCTGGTATTCGCCGACCTTCTTTTCGAAAAAGTTGGTCTTGCCCTCT-GT-A 375225 Query 13422 TATATTTTC--CATAAAATCGAATGGATTTGTTGACATAA-ACACTTTATCACAACCTAG 13478 ||||| || |||||||||||| ||||| || ||||| | | || || |||||||| || Sbjct 375224 GATATTATCGACATAAAATCGAACGGATTAGT-GACATTATAAACCTTTTCACAACCGAG 375166 Query 13479 TTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCAT 13538 ||| | || | || ||||| | ||| || || || || |||| | | || ||||| Sbjct 375165 TTCCATTAGCAGTCGGTCAGCCACAAATTCTATGTACTGGCACATGAGCTTGCAGTTCAT 375106 Query 13539 ACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTC 13598 || || || | ||||| | | || | | ||| || | ||| ||| || || || Sbjct 375105 CCCGATAAGACTAACAGGCAGTGCATCCGACAGAAACTCCTGTTCGATAACAACTGCATC 375046 Query 13599 GTTTATAATAATCTTAATAATGTCATTAGAAGGAGGATATTTTA----GATGTTTAAAAA 13654 ||||| | | | | || || ||||| | ||| | ||| || | Sbjct 375045 TCGAATAATGCCCGTCACTCTTTCTTT----GGAGGGTTTTTGAACGAGATAGGAGAATA 374990 Query 13655 TTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATG 13714 |||||| ||||| |||||||| | || || ||||| || ||||| |||||||||| Sbjct 374989 GTAAACAGGCAAAGTCACAATGCAATCCTTCGTCTCTGGAGATCAGTTCATTTGAAAATG 374930 Query 13715 TTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAA 13774 | | || |||||||| || ||||| || | ||| || || | ||| || || || | Sbjct 374929 TCAGGCCGGGCATCAAGCCGCGTTTCTTAAGCCAGAAGATCGAAGCAAAGCTGCCAGAGA 374870 Query 13775 AGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGT 13834 | |||||||| || || || || || || | | || |||||||| | | | ||| Sbjct 374869 AAAATATTCCTTCGACAGCTGCGAAAGCGACGATTCTCTCTCCAAATGTGGACGTCTTGG 374810 Query 13835 TTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTG 13894 ||||| || ||||| || | ||| | | | | | | |||||| |||| Sbjct 374809 AGCTGATCCACTTAAGCGCCCAGTCCGCTTTCCTCCTTACACAGGGAAGTGTTTCAATTG 374750 Query 13895 CATTGAATAAATGTTCCTTCTCTTTAGTACTTGAA-----ATGTATGTATCAATAAGTAA 13949 | || || || | ||| ||| | || || ||||| || ||||| || | Sbjct 374749 CGTTAAACAA--GAAACTTTTCT---GAACAGGATCGCTGATGTAGGTCTCAATCAGCAT 374695 Query 13950 GCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGC 14009 ||| |||||||||||||| || ||||| || ||||| ||||| ||||| ||||||||||| Sbjct 374694 GCTGTACATTTCAGAGTGAATATTTTCGATGGCTATTTGAAACCCATAGAAACATCTAGC 374635 Query 14010 TTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATC 14069 || | ||| || ||| | |||| ||| | | ||||| || ||||| ||||| Sbjct 374634 CTCGGTTACTTGCACTTCCTGGCTGAATCGTTCCACAAGATTTTCGTTCACAATGCCATC 374575 Query 14070 ACTAGCTGCAAAAAATGCCA--ATATGTTTTTAATAAAGTATTGCTCTTCATTGT---TG 14124 | ||||| ||||| |||| | ||| | || ||| ||| |||||||| | Sbjct 374574 AGATGCTGCGAAAAAGGCCAGCACATGCGAT--ATGAAG---TGCCTTTCATTGTTTGTC 374520 Query 14125 AGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTA 14184 || || ||||||| | | || | ||| || || ||||| || |||||||| Sbjct 374519 AGCTTATTCCAATGATCGAGGTCTTGAGATAGGTCCACTTCTTCCGTGGTCCAAAACGAG 374460 Query 14185 GCGACAGCTTTTTTATACATTACCCATATTTCTTTATAT 14223 || | ||||| || ||| || |||| || ||| |||| Sbjct 374459 GCTTCCGCTTTCTTGTACTTTTCCCAGATGTCTGGATAT 374421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478539816436320