Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq7343 316 3e-81 seq7149 113 6e-20 >seq7343 Length=933009 Score = 316 bits (350), Expect = 3e-81 Identities = 608/891 (68%), Gaps = 13/891 (1%) Strand=Plus/Minus Query 41763 TAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCA 41822 |||| || | ||| |||||||| || || ||||||||||| || ||||| || || Sbjct 375286 TAACACCTACTTTCTGGTATTCGCCGACCTTCTTTTCGAAAAAGTTGGTCTTGCCCTC-- 375229 Query 41823 ATG-ATATATTTTC--CATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATC 41879 || | ||||| || ||| ||||| |||||||| || |||||||||| |||| | | | Sbjct 375228 -TGTAGATATTATCGACATAAAATCGAACGGATTAGTGACATTATAAACCTTTTCACAAC 375170 Query 41880 CCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAAT 41939 | | ||| | || || || || | |||||||| || ||| | | || | Sbjct 375169 CGAGTTCCATTAGCAGTCGGTCAGCCACAAATTCTATGTACTGGCACATGAGCTTGCAGT 375110 Query 41940 TCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCG 41999 |||| || ||||| |||| || || || | | ||||| || ||||| ||| || | Sbjct 375109 TCATCCCGATAAGACTAACAGGCAGTGCATCCGACAGAAACTCCTGTTCGATAACAACTG 375050 Query 42000 CGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACA 42059 | ||| ||||| | ||| |||||| ||| | | | || || | Sbjct 375049 CATCTCGAATAATGCCCGTCACTCTTTCTTTGGAGGGTTTTTGAACGAGATAGGAGAATA 374990 Query 42060 TCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACG 42119 ||||| || || || || |||| || || ||||| || | ||| || ||||| | Sbjct 374989 GTAAACAGGCAAAGTCACAATGCAATCCTTCGTCTCTGGAGATCAGTTCATTTGAAAATG 374930 Query 42120 TGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAA 42179 | || |||||||| | ||| || || |||||||| || || || ||||| ||||| | Sbjct 374929 TCAGGCCGGGCATCAAGCCGCGTTTCTTAAGCCAGAAGATCGAAGCAAAGCTGCCAGAGA 374870 Query 42180 AGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCAT 42239 | || |||||||| || || || || || | | |||||||||| | || || ||| | Sbjct 374869 AAAATATTCCTTCGACAGCTGCGAAAGCGACGATTCTCTCTCCAAATGTGG-AC-GTCTT 374812 Query 42240 GTA-----TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 42294 | | ||||||| | ||||| || || ||| | ||||||| || | ||||| || Sbjct 374811 GGAGCTGATCCACTTAAGCGCCCAGTCCGCTTTCCTCCTTACACAGGGAAGTGTTTCAAT 374752 Query 42295 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACT 42354 || ||||| | | |||| | | | ||| | | || || || |||| | || Sbjct 374751 TGCGTTAAACAAGAAACTTTTCTGAACAGGATCGCTGATGTAGGTCTCAATCAGCATGCT 374692 Query 42355 ATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTC 42414 |||||||| || ||||| ||||| ||||| || ||||| || ||||||||||| ||||| Sbjct 374691 GTACATTTCAGAGTGAATATTTTCGATGGCTATTTGAAACCCATAGAAACATCTAGCCTC 374632 Query 42415 GGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACT 42474 ||| || || ||||| | |||||||| | | |||||||||||| || || ||| Sbjct 374631 GGTTACTTGCACTTCCTGGCTGAATCGTTCCACAAGATTTTCGTTCACAATGCCATCAGA 374572 Query 42475 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATT 42534 ||||| ||||| |||| ||||| ||| || | |||| | ||| | ||||| Sbjct 374571 TGCTGCGAAAAAGGCCAGCACATGCGATATGAAGTGCCTTTCATTGTTTGTCAGCTTATT 374512 Query 42535 CCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGC 42594 ||||| || || |||| ||||| || |||||||| |||||||| || ||||| || Sbjct 374511 CCAATGATCGAGGTCTTGAGATAGGTCCACTTCTTCCGTGGTCCAAAACGAGGCTTCCGC 374452 Query 42595 CTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAA 42645 || || ||| | | |||||| || |||||||||| ||||| || ||||| Sbjct 374451 TTTCTTGTACTTTTCCCAGATGTCTGGATATTGAATGGGGAAGATGACAAA 374401 >seq7149 Length=218332 Score = 113 bits (124), Expect = 6e-20 Identities = 208/305 (68%), Gaps = 0/305 (0%) Strand=Plus/Minus Query 72352 TAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 72411 ||||||||||| || || ||||| ||| | || || || ||| || | ||| | Sbjct 122239 TAGATGCCCTCAATGCTGTCATCGGGCATCATCAGCAGGAAGCAGGAGGATAGTTGAGGT 122180 Query 72412 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGT 72471 | || | || || || | || ||| |||||||| || | || || |||| Sbjct 122179 CTGGGCGTGGCGGCGTTGAACAGAGTGGGACTGGCGTGCGTGAAGAACTTCTCTGACATG 122120 Query 72472 AGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGC 72531 | ||||| || || || ||||| || ||||| | ||| || || || | ||| | | Sbjct 122119 AAGTTGTAGGTTTCGATTGCTGAATCAATATCTTCTCCATGGATGCCCACTGAGACCCTC 122060 Query 72532 ATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTT 72591 || ||||| ||||| || |||||||| ||||| || || |||| | || || | Sbjct 122059 ATCAACATGTGCTGCGGCCTTTCAACAATCTTTCCGTTGATCTTCAGAAGATACGACCTC 122000 Query 72592 TCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAA 72651 |||| ||||| || ||||| |||||||| || || ||||| ||||||||||| ||| Sbjct 121999 TCCAGGGTTTTGAATCCAAAGTAGTTGTACGAGAAATCTCGGTCGTAAATAATGCACGAG 121940 Query 72652 TTGAG 72656 ||||| Sbjct 121939 TTGAG 121935 Score = 113 bits (124), Expect = 6e-20 Identities = 342/525 (65%), Gaps = 5/525 (1%) Strand=Plus/Minus Query 70801 GTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGA 70860 || ||||| |||||| || || | || || | | ||| ||||| || ||||| || Sbjct 124026 GTGAACTGGATGGGATTGGCGGCCGGCTTGGTTCTCAAATAATACATTCCGGTTTTCAGG 123967 Query 70861 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATG 70920 || |||| |||||||| ||||| | || | ||||| | | | ||| Sbjct 123966 CCCTTCTTCCAACCGTAAAAGTGCATCGAGGACAGAACGCCGTAGCTGGCTTTTTCAATG 123907 Query 70921 TGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 70980 || || |||| || ||||| ||||| || || || | || || ||||| | | | Sbjct 123906 TGGATGTTCAAACTTTGGCTTTGGTCGATAAATGCGCCGCGATCCGCGGCCATATCGAGG 123847 Query 70981 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 71040 || ||||| | ||||||||| | || || || | | ||| | || || || | | Sbjct 123846 ATGACTTTTTGCGAAATTTCCCACACCGTCTTGTAGATTGCCTTCAAGTCATCAGGGATG 123787 Query 71041 TTTG---TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTC 71097 | | | || || || || || || || || | || || ||| || | | Sbjct 123786 TCGGGGATGTTTTGTATCGAGCCGTGATTGGCTATGACTTGGTTCTTCATCGTGTCGTCC 123727 Query 71098 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCA 71157 || | | ||| ||||| || | | || ||||| |||| || |||||||| || || Sbjct 123726 CACAGTCCTCTTTCGGTCAAGTCCTTGAGAAGATGCTGATTGACCACTTGAAACTCCCCG 123667 Query 71158 GACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCC 71217 |||| ||||| ||||||||||| ||||| || ||||| || || || ||||||||| Sbjct 123666 GACAGGACTCTCCGAGTGTAAATGTTACTAGTGTACGGCTCGACGCTTTCGTTATTTCCC 123607 Query 71218 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTA-TTTCTAAGACC 71276 | ||||| || ||||| || || ||||| || |||| || || | ||||| | || Sbjct 123606 AGGATTTGGGCGGTTGAAGCCGTGGGCATTGGGGCCA-GAAGCAACGAGTTTCTTACGCC 123548 Query 71277 ATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATC 71321 |||| |||||| | |||| | |||||| ||| ||||| Sbjct 123547 ATGTTTGGCGATTTTCGCCTTTAACGCCGCCCAATCCCACAGATC 123503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671070508902880