Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq7343 221 2e-52 seq7149 111 2e-19 seq4314 96.9 5e-15 seq5491 84.2 3e-11 seq4315 84.2 3e-11 >seq7343 Length=933009 Score = 221 bits (244), Expect = 2e-52 Identities = 567/861 (66%), Gaps = 12/861 (1%) Strand=Plus/Plus Query 125010 TATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAG 125069 |||| ||||| ||||||| |||||| || || | ||||| |||||||| ||||| Sbjct 374422 TATCCAGACATCTGGGAAAAGTACAAGAAAGCGGAAGCCTCGTTTTGGACCACGGAAGAA 374481 Query 125070 GTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAG 125129 || || || || | ||||| | ||||| | | | |||| | | ||| | | Sbjct 374482 GTGGACCTATCTCAAGACCTCGATCATTGGAATAAGC---TGACAAACAATGAAAGGCAC 374538 Query 125130 TTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTG 125189 || |||||||| | ||||||| || || | || ||||| || || ||||| ||||| Sbjct 374539 TTCATATCGCATGTGCTGGCCTTTTTCGCAGCATCTGATGGCATTGTGAACGAAAATCTT 374598 Query 125190 TTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAA 125249 || ||||||| || || || | | |||| || || || || || ||| Sbjct 374599 GTGGAACGATTCAGCCAGGAAGTGCAAGTAACCGAGGCTAGATGTTTCTATGGGTTTCAA 374658 Query 125250 ATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGC 125309 || || || || | ||||| ||||||||| | |||||||| | ||||| || Sbjct 374659 ATAGCCATCGAAAATATTCACTCTGAAATGTACAGCATGCTGATTGAGACCTACATCAGC 374718 Query 125310 GATCCGCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAA 125369 ||||| | ||| | | ||||||||||| || || | || | | || | | Sbjct 374719 GATCCTGTTCAGAAAAGTTTCTTGTTTAACGCAATTGAAACACTTCCCTGTGTAAGGAGG 374778 Query 125370 AAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTG 125429 || || | |||| | || ||||||| | | | ||| | | | || ||| | Sbjct 374779 AAAGCGGACTGGGCGCTTAAGTGGATCAGCTCCAAGACGTCCACATTTGGAGAGAGAATC 374838 Query 125430 GTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGG 125489 || || ||||| || || || || || || || || || || ||||| | ||||| ||| Sbjct 374839 GTCGCTTTCGCAGCTGTCGAAGGAATATTTTTCTCTGGCAGCTTTGCTTCGATCTTCTGG 374898 Query 125490 CTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGAC 125549 || ||||| ||||| | |||||||| ||||| || || | || || ||||| Sbjct 374899 CTTAAGAAACGCGGCTTGATGCCCGGCCTGACATTTTCAAATGAACTGATCTCCAGAGAC 374958 Query 125550 GAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGC 125609 || || | || |||||||||||| | |||| || | |||||| ||| | Sbjct 374959 GAAGGATTGCATTGTGACTTTGCCTGTTTACTATT---CTCCTATCT-CGTTC-----AA 375009 Query 125610 AGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAG 125669 | | || | | |||| || | |||| | ||||| || || ||||| ||| Sbjct 375010 AAACCCTCCAAAGAAAGAGTGACGGGCATTATTCGAGATGCAGTTGTTATCGAACAGGAG 375069 Query 125670 TTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAG 125729 ||||| | || | || || || || | || || |||||||||||||| |||||| || Sbjct 375070 TTTCTGTCGGATGCACTGCCTGTTAGTCTTATCGGGATGAACTGCAAGCTCATGTGCCAG 375129 Query 125730 TACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGCAAGATTTACAAC 125789 |||||||| |||||||| || || || || || | | | ||| |||| || Sbjct 375130 TACATAGAATTTGTGGCTGACCGACTGCTAATGGAACTCGGTTGTGAAAAGGTTTATAAT 375189 Query 125790 GCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTC 125849 | || ||||| || ||||| ||| | | ||||| |||||| ||||||||||||||| Sbjct 375190 GTCACTAATCCGTTCGATTTTATGTCGATAATATCTACAGAGGGCAAGACCAACTTTTTC 375249 Query 125850 GAGAAGAAGGTCAGCGAGTAC 125870 || ||||||||| |||| ||| Sbjct 375250 GAAAAGAAGGTCGGCGAATAC 375270 >seq7149 Length=218332 Score = 111 bits (122), Expect = 2e-19 Identities = 179/255 (70%), Gaps = 2/255 (1%) Strand=Plus/Plus Query 97992 GGGTCCATTCAAAACATTACCATCATCCCGGAAGAGTTGCGCAGAATCTACAAGACTGTC 98051 || || || |||||||| || |||||| || || ||| |||||||||||| || Sbjct 123764 GGCTCGATACAAAACATCCCCGACATCCCTGATGACTTGAAGGCAATCTACAAGACGGTG 123823 Query 98052 TGGGAGATTCCG-ACCAAGACGCTGATCGATATGGCTGCCGACAGAGGTGTCTACATTGA 98110 ||||| ||| || | ||| | | |||||||||| || || | || | | || || Sbjct 123824 TGGGAAATTTCGCAAAAAGTC-ATCCTCGATATGGCCGCGGATCGCGGCGCATTTATCGA 123882 Query 98111 CCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCGTATGACTTCGAT 98170 ||| || ||| || || | || ||| | ||| |||| | | || | ||||| Sbjct 123883 CCAAAGCCAAAGTTTGAACATCCACATTGAAAAAGCCAGCTACGGCGTTCTGTCCTCGAT 123942 Query 98171 ACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATCTGAGAACAAAGTC 98230 |||||||||| ||||| |||||||| || || || ||||| ||| ||||||| ||| | Sbjct 123943 GCACTTTTACGGTTGGAAGAAGGGCCTGAAAACCGGAATGTATTATTTGAGAACCAAGCC 124002 Query 98231 GGCCACCAATGCCAT 98245 |||| ||||| |||| Sbjct 124003 GGCCGCCAATCCCAT 124017 >seq4314 Length=7604 Score = 96.9 bits (106), Expect = 5e-15 Identities = 152/216 (70%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 70192 CAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAAAT 70251 ||| || |||||||| ||||| | |||||| | ||||| || | ||| | | |||| Sbjct 2004 CAAACCCACAGATAGAAGGATGATTATGTGCGCTTGGAACCCGGTAGACATTCCTGAAAT 1945 Query 70252 GGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTAC--TCGTACGATGGCAAATTGTCA 70309 ||| | || || ||||| ||| | | ||||||||| | || |||| || |||| Sbjct 1944 GGCTTTGCCCCCCTGTCATTGTCTTGTGCAGTTTTACGTTGCTA--ATGGGGAACTGTCG 1887 Query 70310 TGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGC 70369 ||| | ||||||| || || || ||||| || || ||||| ||||||||||| ||| Sbjct 1886 TGCCAATTGTATCAAAGATCAGCGGATATGGGGCTGGGGGTACCTTTTAACATTGCCAGC 1827 Query 70370 TATTCTATGTTGACGCACATGATTGCTCACATTACC 70405 || | || | || ||||||| || || || ||| Sbjct 1826 TACGCCCTGCTCACTTACATGATCGCCCATATCACC 1791 >seq5491 Length=7586 Score = 84.2 bits (92), Expect = 3e-11 Identities = 150/216 (69%), Gaps = 5/216 (2%) Strand=Plus/Plus Query 70192 CAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAAAT 70251 ||| || |||||||| ||||| | |||||| | ||||| || | ||| | | |||| Sbjct 5584 CAAACCCACAGATAGAAGGATGATTATGTGCGCTTGGAACCCGG-AGACATTCCTGAAAT 5642 Query 70252 GGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTAC--TCGTACGATGGCAAATTGTCA 70309 ||| | | || ||||| || | | ||||||||| | || |||| || |||| Sbjct 5643 GGCTTTGCGCCCCTGTCATTGCCTTGTGCAGTTTTACGTTGCTA--ATGGGGAACTGTCG 5700 Query 70310 TGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGC 70369 ||| | ||||||| || |||| ||||| || || ||||| ||||||||||| ||| Sbjct 5701 TGCCAATTGTATCAAAGATCAACCGATATGGGGCTGGGGGTACCTTTTAACATTGCCAGC 5760 Query 70370 TATTCTATGTTGACGCACATGATTGCTCACATTACC 70405 || | || | || ||||||| || || || ||| Sbjct 5761 TACGCCCTGCTCACTTACATGATCGCCCATATCACC 5796 >seq4315 Length=6298 Score = 84.2 bits (92), Expect = 3e-11 Identities = 150/216 (69%), Gaps = 5/216 (2%) Strand=Plus/Plus Query 70192 CAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAAAT 70251 ||| || |||||||| ||||| | |||||| | ||||| || | ||| | | |||| Sbjct 2216 CAAACCCACAGATAGAAGGATGATTATGTGCGCTTGGAACCCGG-AGACATTCCTGAAAT 2274 Query 70252 GGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTAC--TCGTACGATGGCAAATTGTCA 70309 ||| | | || ||||| || | | ||||||||| | || |||| || |||| Sbjct 2275 GGCTTTGCGCCCCTGTCATTGCCTTGTGCAGTTTTACGTTGCTA--ATGGGGAACTGTCG 2332 Query 70310 TGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGC 70369 ||| | ||||||| || |||| ||||| || || ||||| ||||||||||| ||| Sbjct 2333 TGCCAATTGTATCAAAGATCAACCGATATGGGGCTGGGGGTACCTTTTAACATTGCCAGC 2392 Query 70370 TATTCTATGTTGACGCACATGATTGCTCACATTACC 70405 || | || | || ||||||| || || || ||| Sbjct 2393 TACGCCCTGCTCACTTACATGATCGCCCATATCACC 2428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740983352590880