Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq6955 129 4e-25 seq5761 105 5e-18 seq7010 100 2e-16 seq7453 95.1 9e-15 seq6233 95.1 9e-15 seq1586 95.1 9e-15 >seq6955 Length=469295 Score = 129 bits (142), Expect = 4e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATC-GTT 43953 ||||| |||||||| ||||||||||| | ||| ||| |||||||| || || || | | Sbjct 95094 CCTCCCCTCAATCTCAACACCAAATGCAAAGTGGACTCCTTTTGAATGTTGTAGTCAGAT 95035 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || || || |||| ||||| || ||||||||||| ||||| | |||||||| | || Sbjct 95034 AAAGTG-CGTCCATCCTCCAACTGCTTTCCTGCAAAGATCAATCTCTGCTGGTCTGGGGG 94976 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||| || ||| || || || || | ||| || |||| || ||||| Sbjct 94975 AATGCCTTCCTTGTCTTGGATCTTCGCCTTAACGTTCTCAATTGTGTCTGAGGGTTCCAC 94916 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| ||||| ||||||||||| ||||| || |||||||| Sbjct 94915 TTCCAAAGTAATCGTTTTGCCGGTTAAAGTTTTCACGAAGATTTGCAT 94868 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || ||||||||||| ||||||||||| || ||| |||||||| || |||||||| | Sbjct 94638 CCACCTCTCAATCTCAACACCAAATGCAGAGTGGATTCTTTTTGGATGTTATAATCTGAT 94579 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | || |||| ||||| ||||| || || || ||||| ||||| ||||| | || Sbjct 94578 AGGGTGCGGCCATCTTCCAACTGTTTGCCAGCGAAAATCAATCGTTGTTGGTCTGGGGGA 94519 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||||| || ||| ||| || ||| || | ||| ||| |||| || || || Sbjct 94518 ATTCCTTCCTTGTCTTGAATCTTGGCTTTAACGTTCTCAATAGTGTCTGATGGTTCAACC 94459 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || ||||| || || ||||||||||| || || ||||| Sbjct 94458 TCAAGTGTGATAGTTTTGCCAGTCAAAGTCTTCACGAAAATCTGCAT 94412 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 |||||||||| ||| || |||||||||| ||| ||||| || || || || || Sbjct 94866 CCTCCTCTCAGTCTCAAAACCAAATGTAAAGTGGATTCTTTCTGGATGTTGTAGTCAGAC 94807 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 ||| ||| |||| || || ||||| || ||||| || |||| || ||||| |||| Sbjct 94806 AATGTACGTCCATCTTCTAACTGTTTGCCGGCAAAAATTAACCTCTGTTGGTCTGGAGGA 94747 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||||| || || ||| || ||| || | ||| ||||| | || || || Sbjct 94746 ATTCCTTCCTTGTCCTGAATCTTGGCTTTAACATTTTCAATGGTATCAGATGGTTCGACT 94687 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||||||||| || || | || || ||||| |||||||| Sbjct 94686 TCAAGTGTAATTGTTTTGCCAGTAAGGGTTTTTACAAAAATTTGCAT 94640 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATC-GTT 43953 ||||||||||| || | |||||| || || ||| || || || || || ||||| | | Sbjct 95778 CCTCCTCTCAACCTGAGCACCAAGTGAAGAGTGGATTCCTTCTGTATGTTGTAATCCGAT 95719 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || || || | || ||||||||||| ||||| || ||||||| |||||||| |||| Sbjct 95718 AAAGTGCGGC-CGTCTTCCAATTGTTTGCCTGCGAAAATCAACCTCTGCTGGTCTGGAGG 95660 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||||| || || || ||| || | | | || |||| || ||||| Sbjct 95659 AATGCCTTCTTTGTCCTGGATCTTAGCTTTAACATTCTCGATGGTGTCTGAGGGTTCCAC 95600 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || ||||| || || | || ||||| || |||||||| Sbjct 95599 TTCCAAAGTGATAGTTTTTCCAGTCAGGGTTTTCACGAAAATTTGCAT 95552 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || |||||||| || | |||||| || || ||| || || || || || ||||| Sbjct 95322 CCACCTCTCAACCTGAGCACCAAGTGAAGAGTGGATTCCTTCTGGATGTTGTAATCAGAC 95263 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 || || | || ||||||||||||||||| || |||| | || ||||| | || Sbjct 95262 AAAGTTCGGCCGTCTTCCAATTGTTTTCCTGCGAAAATCAGTCTCTGTTGGTCTGGGGGA 95203 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | |||||||| || || || ||| || | ||| |||||| | ||||| || Sbjct 95202 ATTCCTTCTTTGTCCTGGATCTTGGCTTTAACATTTTCAATAGTATCAGAAGGCTCGACT 95143 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| ||||| || || | ||| || ||||| |||||||| Sbjct 95142 TCAAGTGTAATGGTTTTTCCAGTAAGAGTTTTGACAAAAATTTGCAT 95096 >seq5761 Length=8615 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||||||||||||||| | ||||||||| || ||| || || || || || || ||| Sbjct 326 ACCTCCTCTCAATCTGAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGA 267 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || ||| |||| ||||| || || || || || ||||| || ||||| || |||| Sbjct 266 TAGGGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGCTGCTGATCGGGAGG 207 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 || ||||| || || |||||| ||| || | | | || |||| ||||| || Sbjct 206 TATGCCTTCCTTGTCCTGAATTTTCGCTTTTACATTTTCGATGGTGTCTGATGGCTCGAC 147 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || || ||||| || | ||| ||||| || |||||||| Sbjct 146 CTCAAGGGTGATGGTCTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 99 >seq7010 Length=35453 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||||||||||||||| | |||||| || || ||| || || || || || || ||| Sbjct 8679 ACCTCCTCTCAATCTGAGCACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGA 8738 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || ||| |||| ||||| || || || || || ||||| || ||||| || |||| Sbjct 8739 TAGGGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGCTGCTGATCGGGAGG 8798 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 || ||||| || || |||||| ||| || | | | || |||| ||||| || Sbjct 8799 TATGCCTTCCTTGTCCTGAATTTTCGCTTTTACATTTTCGATGGTGTCTGATGGCTCGAC 8858 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || || ||||| || | ||| ||||| || |||||||| Sbjct 8859 CTCAAGGGTGATGGTCTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 8906 >seq7453 Length=213858 Score = 95.1 bits (104), Expect = 9e-15 Identities = 163/234 (70%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAAT-CGTT 43953 ||||| ||||| || ||||||||||| | ||| ||| || || || || || | || Sbjct 107664 CCTCCCCTCAACCTCAACACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCCGAC 107723 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || || || |||| |||| || || || || || |||| ||| |||||||| |||| Sbjct 107724 AAAGTG-CGTCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCGGGAGG 107782 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | || |||||||| ||||| ||| || | | | |||||||| ||||| || Sbjct 107783 GATGCCCTCTTTATCCTGGATTTTGGCTTTAACATTTTCGATAGTATCTGATGGCTCGAC 107842 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATGTCGAG 44127 || | || || || || || || | ||||||||| || || ||||| || || Sbjct 107843 CTCAAGAGTGATGGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCATCTCTAG 107896 >seq6233 Length=1575 Score = 95.1 bits (104), Expect = 9e-15 Identities = 163/234 (70%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAAT-CGTT 43953 ||||| ||||| || ||||||||||| | ||| ||| || || || ||||| | || Sbjct 640 CCTCCCCTCAACCTCAACACCAAATGCAAAGTGGACTCCTTCTGGATGTTATAGTCCGAC 581 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || || || |||| |||| || || || || || |||| ||| |||||||| |||| Sbjct 580 AAAGTG-CGTCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCGGGAGG 522 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | || ||||| || ||||| ||| || | | | ||||||| ||||| || Sbjct 521 GATGCCCTCTTTGTCCTGGATTTTGGCTTTAACATTTTCGATGGTATCTGATGGCTCGAC 462 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATGTCGAG 44127 || | || || || || || || | ||||||||| || || ||||| ||||| Sbjct 461 CTCAAGAGTGATGGTCTTCCCCGTCAGAGTCTTCACGAAGATCTGCATCTCGAG 408 >seq1586 Length=2413 Score = 95.1 bits (104), Expect = 9e-15 Identities = 163/234 (70%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAAT-CGTT 43953 ||||| ||||| || ||||||||||| | ||| ||| || || || ||||| | || Sbjct 2078 CCTCCCCTCAACCTCAACACCAAATGCAAAGTGGACTCCTTCTGGATGTTATAGTCCGAC 2019 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || || || |||| |||| || || || || || |||| ||| |||||||| |||| Sbjct 2018 AAAGTG-CGTCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCGGGAGG 1960 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | || ||||| || ||||| ||| || | | | ||||||| ||||| || Sbjct 1959 GATGCCCTCTTTGTCCTGGATTTTGGCTTTAACATTTTCGATGGTATCTGATGGCTCGAC 1900 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATGTCGAG 44127 || | || || || || || || | ||||||||| || || ||||| ||||| Sbjct 1899 CTCAAGAGTGATGGTCTTCCCCGTCAGAGTCTTCACGAAGATCTGCATCTCGAG 1846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354742196299824