Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq6955 122 7e-23 >seq6955 Length=469295 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||| |||| ||||| | |||||| || || || ||||| || || ||||||||||| Sbjct 95324 TTCCACCTCTCAACCTGAGCACCAAGTGAAGAGTGGATTCCTTCTGGATGTTGTAATCAG 95265 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 || |||| |||||||||||||| || || |||| || |||||||| || || Sbjct 95264 ACAAAGTTCGGCCGTCTTCCAATTGTTTTCCTGCGAAAATCAGTCTCTGTTGGTCTGGGG 95205 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | ||||||||||| || || ||| || | ||| || ||| ||| || Sbjct 95204 GAATTCCTTCTTTGTCCTGGATCTTGGCTTTAACATTTTCAATAGTATCAGAAGGCTCGA 95145 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 ||| | ||||||||||| || || | ||||||||||||||||||||| Sbjct 95144 CTTCAAGTGTAATGGTTTTTCCAGTAAGAGTTTTGACAAAAATTTGCATT 95095 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 ||||||||| | ||||| |||||||||| || |||||||| || |||||||| || Sbjct 94868 TTCCTCCTCTCAGTCTCAAAACCAAATGTAAAGTGGATTCTTTCTGGATGTTGTAGTCAG 94809 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 || || |||||| || |||||||| ||| |||| | ||||||||| || | Sbjct 94808 ACAATGTACGTCCATCTTCTAACTGTTTGCCGGCAAAAATTAACCTCTGTTGGTCTGGAG 94749 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | ||||| ||||| ||| || ||| || | ||| | ||| ||||| Sbjct 94748 GAATTCCTTCCTTGTCCTGAATCTTGGCTTTAACATTTTCAATGGTATCAGATGGTTCGA 94689 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 ||| | ||||| |||||||| || | ||||| ||||||||||||||| Sbjct 94688 CTTCAAGTGTAATTGTTTTGCCAGTAAGGGTTTTTACAAAAATTTGCATT 94639 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 ||||||||| ||||| | |||||| || || || ||||| || |||||||||||||| Sbjct 95780 TTCCTCCTCTCAACCTGAGCACCAAGTGAAGAGTGGATTCCTTCTGTATGTTGTAATCCG 95721 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | ||| ||||||||||||||||| || |||| | |||||| || || | Sbjct 95720 ATAAAGTGCGGCCGTCTTCCAATTGTTTGCCTGCGAAAATCAACCTCTGCTGGTCTGGAG 95661 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | |||||||||||| || || ||| || | | | | || |||||| Sbjct 95660 GAATGCCTTCTTTGTCCTGGATCTTAGCTTTAACATTCTCGATGGTGTCTGAGGGTTCCA 95601 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 ||||| || || ||||| || |||| ||||| || |||||||||||| Sbjct 95600 CTTCCAAAGTGATAGTTTTTCCAGTCAGGGTTTTCACGAAAATTTGCATT 95551 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||| |||| || |||||||||||||| || || ||||||||||| ||||| |||| | Sbjct 94640 TTCCACCTCTCAATCTCAACACCAAATGCAGAGTGGATTCTTTTTGGATGTTATAAT--C 94583 Query 20040 CCATAGTTTTAG--AATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGAC 20097 |||| | | ||||||||| |||||||| || |||| | | ||||| || Sbjct 94582 TGATAGGGTGCGGCCATCTTCCAACTGTTTGCCAGCGAAAATCAATCGTTGTTGGTCTGG 94523 Query 20098 GGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTC 20157 ||| | ||||| ||||| ||| || ||| || | ||| || || ||||| Sbjct 94522 GGGAATTCCTTCCTTGTCTTGAATCTTGGCTTTAACGTTCTCAATAGTGTCTGATGGTTC 94463 Query 20158 CGTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | || || |||||||| ||||| || || || ||||| ||||| Sbjct 94462 AACCTCAAGTGTGATAGTTTTGCCAGTCAAAGTCTTCACGAAAATCTGCAT 94412 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||||| | || ||| ||||| || || ||||| ||||| || |||||||| ||| Sbjct 94410 CCTCCTCTCAGCCGCAAAACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCGGAA 94351 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| |||||||||||| || || || |||| || | ||| || || ||| Sbjct 94350 AGAGTGCGTCCATCTTCCAATTGCTTTCCAGCGAAAATGAGACGCTGCTGGTCTGGGGGG 94291 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||||||||| ||||| || || | | | | || ||||||| | Sbjct 94290 ATTCCTTCTTTGTCCTGGATTTTAGCCTTAACATTCTCGATTGTGTCTGAAGGTTCCACT 94231 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| || |||||||| || || || ||||| || || || ||||| Sbjct 94230 TCCAAAGTGATGGTTTTTCCAGTTAATGTTTTCACGAAGATCTGCAT 94184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419545328868828