Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq7343 241 1e-58 >seq7343 Length=933009 Score = 241 bits (266), Expect = 1e-58 Identities = 565/843 (67%), Gaps = 16/843 (2%) Strand=Plus/Minus Query 12859 TTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATT 12918 ||| || ||||||| || | ||||| |||||||| || || || ||| || |||| Sbjct 375276 TTTCTGGTATTCGCCGACCTTCTTTTCGAAAAAGTTGGTCTTGCCCTCTGTAGA--TATT 375219 Query 12919 TTC--CATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGT 12976 || |||||||||||| ||||| | | ||| |||| ||| || | ||| | | Sbjct 375218 ATCGACATAAAATCGAACGGATTAGTGACATTATAAACCTTTTCACAACCGAGTTCCATT 375159 Query 12977 AACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATT 13036 | || || |||||| ||||| ||||||||||| ||| | | |||||||| || || Sbjct 375158 AGCAGTCGGTCAGCCACAAATTCTATGTACTGGCACATGAGCTTGCAGTTCATCCCGATA 375099 Query 13037 AATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACT 13096 | | ||||||| || || | | ||| | | ||| ||| ||||||| || || Sbjct 375098 AGACTAACAGGCAGTGCATCCGACAGAAACTCCTGTTCGATAACAACTGCATCTCGAATA 375039 Query 13097 ATGTCTCTTATTACGTTCTCTAATGGAGGATTT--GAT--AGATGCTTAAACATCATACA 13152 ||| | | | | | |||| | ||||| ||| || |||| || | | ||| Sbjct 375038 ATGCCCGTCACT-CTTTCTTT---GGAGGGTTTTTGAACGAGATAGGAGAATAGTAAACA 374983 Query 13153 TGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACC 13212 ||||| ||||| ||||||||||| ||||| || || || ||||||||||| || || Sbjct 374982 GGCAAAGTCACAATGCAATCCTTCGTCTCTGGAGATCAGTTCATTTGAAAATGTCAGGCC 374923 Query 13213 CGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTAT 13272 ||||| | || ||||| |||| ||| || || | |||||| || || |||||||| Sbjct 374922 GGGCATCAAGCCGCGTTTCTTAAGCCAGAAGATCGAAGCAAAGCTGCCAGAGAAAAATAT 374863 Query 13273 TCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGT--ACTATTTTTACTCTCT 13330 |||||| || ||||| || || | | || || ||| | || || || | || Sbjct 374862 TCCTTCGACAGCTGCGAAAGCGACGATTCTCTCTCCAAATGTGGACGTCTTGGAG-CTG- 374805 Query 13331 ATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTA 13390 |||||||| ||||||| ||||| | || ||| | |||| ||||||||| Sbjct 374804 ATCCACTTAAGCGCCCAGTCCGCTTTCCTCCTTACACAGGGAAGTGTTTCAATTGCGTTA 374745 Query 13391 AATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATT 13450 || || || |||| | | || || || || || |||| | ||| |||||| Sbjct 374744 AACAAGAAACTTTTCTGAACAGGATCGCTGATGTAGGTCTCAATCAGCATGCTGTACATT 374685 Query 13451 TCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACC 13510 || || ||||||||||| || |||||||| || ||||| |||||||||||||| | ||| Sbjct 374684 TCAGAGTGAATATTTTCGATGGCTATTTGAAACCCATAGAAACATCTAGCCTCGGTTACT 374625 Query 13511 TGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCa 13570 || ||||| | |||| ||| | | |||||||| || || || ||| || || Sbjct 374624 TGCACTTCCTGGCTGAATCGTTCCACAAGATTTTCGTTCACAATGCCATCAGATGCTGCG 374565 Query 13571 aaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATCT 13630 ||||| || || | ||| || || | |||| || | || || ||| ||||| Sbjct 374564 AAAAAGGCCAGCACATGCGATATGAAGTGCCTTTCATTGTTTGTCAGCTTATTCCAATGA 374505 Query 13631 GGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTA 13690 | |||| |||| || || || || ||||||||| || || | || ||||| Sbjct 374504 TCGAGGTCTTGAGATAGGTCCACTTCTTCCGTGGTCCAAAACGAGGCTTCCGCTTTCTTG 374445 Query 13691 TAC 13693 ||| Sbjct 374444 TAC 374442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430939391727576