Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq6955 205 2e-47 seq7343 165 2e-35 seq5761 145 2e-29 seq7010 140 7e-28 seq7453 122 2e-22 >seq6955 Length=469295 Score = 205 bits (226), Expect = 2e-47 Identities = 184/231 (80%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||| || || | || | |||||| || ||||||||||| || || |||||| Sbjct 94869 ATTCCTCCTCTCAGTCTCAAAACCAAATGTAAAGTGGATTCTTTCTGGATGTTGTAGTCA 94810 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | || | || ||||||| ||||| || |||||||||| ||||||||| || ||| Sbjct 94809 GACAATGTACGTCCATCTTCTAACTGTTTGCCGGCAAAAATTAACCTCTGTTGGTCTGGA 94750 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||| || ||||||||||| ||||| |||||||| | |||||| ||||| Sbjct 94749 GGAATTCCTTCCTTGTCCTGAATCTTGGCTTTAACATTTTCAATGGTATCAGATGGTTCG 94690 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || |||||||| || || |||||||| ||||||||||| || |||||| Sbjct 94689 ACTTCAAGTGTAATTGTTTTGCCAGTAAGGGTTTTTACAAAAATTTGCATT 94639 Score = 183 bits (202), Expect = 7e-41 Identities = 179/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||| | ||| || || | || | || ||||| ||||| || || || ||| Sbjct 95325 ATTCCACCTCTCAACCTGAGCACCAAGTGAAGAGTGGATTCCTTCTGGATGTTGTAATCA 95266 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | ||||| |||||||| | ||||||||| || ||||| || |||||||| || || Sbjct 95265 GACAAAGTTCGGCCGTCTTCCAATTGTTTTCCTGCGAAAATCAGTCTCTGTTGGTCTGGG 95206 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||||||||| ||||| ||||| ||||| |||||||| | ||||| ||| || Sbjct 95205 GGAATTCCTTCTTTGTCCTGGATCTTGGCTTTAACATTTTCAATAGTATCAGAAGGCTCG 95146 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || |||||||| || || |||||||| ||||| ||||| || |||||| Sbjct 95145 ACTTCAAGTGTAATGGTTTTTCCAGTAAGAGTTTTGACAAAAATTTGCATT 95095 Score = 172 bits (190), Expect = 1e-37 Identities = 157/198 (79%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || |||||||| || || ||||| || ||||| || | || ||||| | |||||| || Sbjct 95976 GTGGATTCTTTTTGGATGTTATAATCTGATAGGGTGCGGCCATCTTCCAATTGTTTGCCT 95917 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| || |||||||| || ||||| |||||||| || ||||| |||||||| || Sbjct 95916 GCGAAAATCAGTCTCTGTTGGTCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTGCCTTA 95857 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | |||||| ||||| || || ||||||||||| || ||||| || ||| Sbjct 95856 ACATTTTCGATGGTATCAGATGGTTCGACTTCAAGTGTAATAGTTTTGCCAGTCAGAGTT 95797 Query 104543 TTTACAAATATCTGCATT 104560 || ||||| ||||||||| Sbjct 95796 TTAACAAAAATCTGCATT 95779 Score = 131 bits (144), Expect = 4e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| |||| | || | || | ||||| |||||||| || || ||||| Sbjct 94413 ATCCCTCCTCTCAGCCGCAAAACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCG 94354 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | || ||||| | ||| |||||||| ||||| || | ||| || || || Sbjct 94353 GAAAGAGTGCGTCCATCTTCCAATTGCTTTCCAGCGAAAATGAGACGCTGCTGGTCTGGG 94294 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||||||||| ||||| || || || || ||||| || | || || |||||| Sbjct 94293 GGGATTCCTTCTTTGTCCTGGATTTTAGCCTTAACATTCTCGATTGTGTCTGAAGGTTCC 94234 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | || || || || ||||| | |||||| || || |||||||| Sbjct 94233 ACTTCCAAAGTGATGGTTTTTCCAGTTAATGTTTTCACGAAGATCTGCAT 94184 Score = 120 bits (132), Expect = 7e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||| ||||| || || | || | || ||||| || || || || ||||| Sbjct 95553 ATTCCTCCTCTCAGCCTGAGCACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCG 95494 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || || || | || ||||||||||| || || | ||| || || || Sbjct 95493 GAAAGTGTGCGGCCATCCTCCAACTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGG 95434 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || || ||||| ||||| || ||||| | |||||| | ||| Sbjct 95433 GGGATGCCTTCCTTGTCTTGGATCTTAGCTTTAACGTTTTCGATGGTATCTGAGGCTTCC 95374 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || | || || || || ||||| || ||||| ||||| || |||||| Sbjct 95373 ACTTCCAAAGTGATGGTTTTTCCAGTCAGGGTTTTAACAAAGATTTGCATT 95323 >seq7343 Length=933009 Score = 165 bits (182), Expect = 2e-35 Identities = 633/978 (65%), Gaps = 32/978 (3%) Strand=Plus/Plus Query 268673 GAACCGCTT-TTAGTAAATAACCCAGATAGATTTGTGATATTTCCAATACAGCATGGTGA 268731 || ||||| |||| || | |||||| | ||||| || || || || || || || Sbjct 374371 GAGCCGCTGCTTAGGGAAAACCCCAGACGG-TTTGTCATCTTCCCCATTCAATATCCAGA 374429 Query 268732 TATATGGAGGATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCT 268791 || ||| | |||||| | || | || || |||||||| |||||||| || || Sbjct 374430 CATCTGGGAAAAGTACAAGAAAGCGGAAGCCTCGTTTTGGACCACGGAAGAAGTGGACCT 374489 Query 268792 GTCTTATGACTTAATAGATTGGAAAAATTTAA-AACCAGAAGAAAGAAGATTTATATCTT 268850 ||| | ||| | ||||||| || | | || || | ||||| || ||||| Sbjct 374490 ATCTCAAGACCTCGATCATTGGAATAAGCTGACAAACA-ATGAAAGGCACTTCATATCGC 374548 Query 268851 ATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGT 268910 || | || || ||||| |||| |||||| || || ||||||||||| || || | Sbjct 374549 ATGTGCTGGCCTTTTTCGCAGCATCTGATGGCATTGTGAACGAAAATCTTGTGGAACGAT 374608 Query 268911 TCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAG 268970 || | || || || || | | || || |||||||| || || || || ||||| || | Sbjct 374609 TCAGCCAGGAAGTGCAAGTAACCGAGGCTAGATGTTTCTATGGGTTTCAAATAGCCATCG 374668 Query 268971 AAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACG 269030 |||||||||| || || |||||||| | | || || || || || ||| | Sbjct 374669 AAAATATTCACTCTGAAATGTACAGCATGCTGATTGAGACCTACATCAGCGAT---CCTG 374725 Query 269031 AAAAGAAAAGACTATTTTCT---TCTATGAGAACTATGGACTGTGTGAGaaaaaaaTCTG 269087 ||||||| | || | | | || ||| | |||||| || | ||| | | Sbjct 374726 TTCAGAAAAGTTTCTTGTTTAACGCAATTGAAACACTTCCCTGTGTAAGGAGGAAAGCGG 374785 Query 269088 AATGGGCTCTGAAATGGATAA---ACGATAGCGCGCCTTACGGAGAAAGGTTAGTTGCTT 269144 | ||||| || || ||||| | | | | | | | ||||| || | || |||| Sbjct 374786 ACTGGGCGCTTAAGTGGATCAGCTCCAAGACGTCCACATTTGGAGAGAGAATCGTCGCTT 374845 Query 269145 TTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGA 269204 | || ||||| ||||| ||||| || || || ||||| | ||||| ||| | |||| Sbjct 374846 TCGCAGCTGTCGAAGGAATATTTTTCTCTGGCAGCTTTGCTTCGATCTTCTGGCTTAAGA 374905 Query 269205 AAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTT 269264 || | ||| | ||||| || | || || || || ||| |||| ||| |||||||| | Sbjct 374906 AACGCGGCTTGATGCCCGGCCTGACATTTTCAAATGAACTGATCTCCAGAGACGAAGGAT 374965 Query 269265 TACACTGCGACTTCGCTTGTTTATTATT-TACTAATTATCTTTCACACAAACCTTCTCAA 269323 | || || ||||| || |||||| |||| | ||| | || || || ||||| || || Sbjct 374966 TGCATTGTGACTTTGCCTGTTTACTATTCTCCTA--TCTCGTT--CAAAAACCCTCCAAA 375021 Query 269324 GATAGAGTATACGAAATTAT---AGATTCAGCTGTTTCTGTAGAAACAGAATTTCTAACG 269380 || ||||| | ||||| |||| ||| ||| | | ||| || ||||| || Sbjct 375022 GAAAGAGTGACGGGCATTATTCGAGATGCAGTTGT---TATCGAACAGGAGTTTCTGTCG 375078 Query 269381 GAAGCTCTATCTATCGATCTTATCGGTATGAATAGCAAATCGATGATAGAATATATTAAG 269440 || || || || | ||||||||| ||||| |||| ||| | || || | Sbjct 375079 GATGCACTGCCTGTTAGTCTTATCGGGATGAACTGCAAGCTCATGTGCCAGTACATAGAA 375138 Query 269441 TTCGTATCTGATAGATTGCTGGTGTCTTTAGGGTTTAGTAAAAA---ATATAACGTTGAA 269497 || || |||| || |||| || | || | || |||| ||||| || Sbjct 375139 TTTGTGGCTGACCGACTGCTAATGGAACTCGG---TTGTGAAAAGGTTTATAATGTCACT 375195 Query 269498 AATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTCGAGAAG 269557 |||||||| ||||||| || ||||| ||| || ||| | || || ||||| ||| Sbjct 375196 AATCCGTTCGATTTTATGTCGATAATATCTACAGAGGGCAAGACCAACTTTTTCGAAAAG 375255 Query 269558 CGGGTAAGTAACTATCAGAAAATGGGTG-TAATGTCTACTAAAGAAGAAAATATTTTCAC 269616 ||| | | || |||||| | |||| || || | | | ||| ||| |||| || Sbjct 375256 AAGGTCGGCGAATACCAGAAAGTAGGTGTTACTGGCGA-GGCCGGAGATAATGTTTTTAC 375314 Query 269617 TACAGATGCAGAATTCTA 269634 || ||||| || ||||| Sbjct 375315 CACTGATGCTGATTTCTA 375332 >seq5761 Length=8615 Score = 145 bits (160), Expect = 2e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || || || | ||| | || ||||| ||||| || || ||||| Sbjct 328 ATACCTCCTCTCAATCTGAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCG 269 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 ||||| || | || ||||| | || || ||||| || || | | ||| ||||| ||| Sbjct 268 GATAGGGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGCTGCTGATCGGGA 209 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 ||||| ||||| || |||||||| || |||||||||||||| | ||| || || || Sbjct 208 GGTATGCCTTCCTTGTCCTGAATTTTCGCTTTTACATTTTCGATGGTGTCTGATGGCTCG 149 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||||||||| || ||||| || || || ||||| Sbjct 148 ACCTCAAGGGTGATGGTCTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 99 >seq7010 Length=35453 Score = 140 bits (154), Expect = 7e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || || || | || | || ||||| ||||| || || ||||| Sbjct 8677 ATACCTCCTCTCAATCTGAGCACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCG 8736 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 ||||| || | || ||||| | || || ||||| || || | | ||| ||||| ||| Sbjct 8737 GATAGGGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGCTGCTGATCGGGA 8796 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 ||||| ||||| || |||||||| || |||||||||||||| | ||| || || || Sbjct 8797 GGTATGCCTTCCTTGTCCTGAATTTTCGCTTTTACATTTTCGATGGTGTCTGATGGCTCG 8856 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||||||||| || ||||| || || || ||||| Sbjct 8857 ACCTCAAGGGTGATGGTCTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 8906 >seq7453 Length=213858 Score = 122 bits (134), Expect = 2e-22 Identities = 163/226 (72%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 104334 CCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATA 104393 |||||| | ||| | || | ||| || || || || ||||| || || ||||| || | Sbjct 107667 CCCCTC--AACCTCAACACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCCGACA 107724 Query 104394 GAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTA 104453 ||| | || ||||| || || || || || || || |||| ||| || || ||||| | Sbjct 107725 AAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCGGGAGGGA 107784 Query 104454 TTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCT 104513 | || ||||||||||| || || ||||| |||||||| | ||||| || || |||| Sbjct 107785 TGCCCTCTTTATCCTGGATTTTGGCTTTAACATTTTCGATAGTATCTGATGGCTCGACCT 107844 Query 104514 CTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | || || || ||||| || || || || || || || |||||||| Sbjct 107845 CAAGAGTGATGGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 107890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151277608233104