Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq2674 129 3e-25 seq2675 123 1e-23 seq7616 122 5e-23 seq7123 114 7e-21 seq7036 114 7e-21 seq7310 113 2e-20 seq7313 111 8e-20 >seq2674 Length=18476 Score = 129 bits (142), Expect = 3e-25 Identities = 82/89 (92%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 11443 TAAAAAATCAA--ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||||| || |||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct 4280 TAAAAAATAAATTATTGGCCCATGAGGGGATCGAACCTGCGACCTTCGCGTTATTAGCAC 4339 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 4340 GACGCTCTAACCAACTGAGCTAATGGGCC 4368 >seq2675 Length=18452 Score = 123 bits (136), Expect = 1e-23 Identities = 81/89 (91%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 11443 TAAAAAATCAA--ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||||| || |||||||||||| |||||||||| ||||||||||||||||||||| Sbjct 4279 TAAAAAATAAATTATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 4338 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 4339 GACGCTCTAACCAACTGAGCTAATGGGCC 4367 >seq7616 Length=854537 Score = 122 bits (134), Expect = 5e-23 Identities = 78/86 (91%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| | | ||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 624217 AAAAAAACTATTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 624276 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 624277 GCTCTAACCAACTGAGCTAATGGGCC 624302 >seq7123 Length=146599 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 90410 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 90351 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 90350 TGAGCTAATGGGCCG 90336 >seq7036 Length=1621437 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 209046 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 209105 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 209106 CTGAGCTAATGGGCC 209120 >seq7310 Length=346861 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 98360 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 98301 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 98300 TGAGCTAATGGGCC 98287 >seq7313 Length=1348093 Score = 111 bits (122), Expect = 8e-20 Identities = 80/91 (88%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 11439 TTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 |||||||||| | | |||||||||| |||||||||| ||||||||||||||||||| Sbjct 1129738 TTAATAAAAAGTAA---TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGC 1129794 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| ||||||| |||||||||||| Sbjct 1129795 ACGACGCTCTAACCAACT-AGCTAATGGGCC 1129824 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261465105466288