Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_006651.1 Length=19161 Score E Sequences producing significant alignments: (Bits) Value seq3610 98.7 1e-16 seq7573 84.2 3e-12 seq6397 82.4 9e-12 >seq3610 Length=3125 Score = 98.7 bits (108), Expect = 1e-16 Identities = 110/145 (76%), Gaps = 3/145 (2%) Strand=Plus/Plus Query 3460 AAAAATAGTATATTACACTACAAGGGCAGAAAGTTGAGATTCCTGCACTGCGCGCCATG- 3518 ||||||||||||||||| |||||| | |||||| || |||| |||||| | || Sbjct 2472 AAAAATAGTATATTACAGTACAAGAGGCGAAAGTCGAAGTTCCGCCACTGCTTGAAGTGG 2531 Query 3519 -TGCCCGAGGCGAAGCCGAGGGCATCATGGCACGCAGTTCAGGGCTCTCAAATTTCTGCC 3577 ||| ||||||||||||||||| |||| ||||||||| |||| | | |||| | Sbjct 2532 CCGCCAGAGGCGAAGCCGAGGGCGTCAT-GCACGCAGTGGCGGGCCTCCGACTTTCGTCT 2590 Query 3578 CATGTAGTGTATACTATTTTTCTTG 3602 | ||| ||||||||||||||||| Sbjct 2591 CGCGTACCGTATACTATTTTTCTTG 2615 Score = 82.4 bits (90), Expect = 9e-12 Identities = 106/143 (74%), Gaps = 4/143 (3%) Strand=Plus/Plus Query 4352 AAATAGTATATTACACTACAAGGGCAGAAAGTTTGAGATTCCTGCACTGCGTGCCAT--A 4409 ||||||||||||||| |||||| | ||||| | || |||| |||||| || | Sbjct 2474 AAATAGTATATTACAGTACAAGAGGCGAAAG-TCGAAGTTCCGCCACTGCTTGAAGTGGC 2532 Query 4410 TGCCCGAGGCGAAGCCGAGGGCATCATGGCACGCAGTTCAGGGCTCTCAAATTTCTGCCC 4469 ||| ||||||||||||||||| |||| ||||||||| |||| | | |||| | | Sbjct 2533 CGCCAGAGGCGAAGCCGAGGGCGTCAT-GCACGCAGTGGCGGGCCTCCGACTTTCGTCTC 2591 Query 4470 ATGTAGTGTATACTAGTTTTCTT 4492 ||| |||||||| ||||||| Sbjct 2592 GCGTACCGTATACTATTTTTCTT 2614 >seq7573 Length=1493758 Score = 84.2 bits (92), Expect = 3e-12 Identities = 106/143 (74%), Gaps = 6/143 (4%) Strand=Plus/Minus Query 3461 AAAATAGTATATTACACTAC---AAGGGCAGAAAGTTGAGATTCCTGCACTGCGCGCCAT 3517 |||||||||||||||| ||| ||| | |||||| || |||| |||||| | || Sbjct 294529 AAAATAGTATATTACAGTACGGTAAGAGATGAAAGTCGAAGTTCCGCCACTGCTTGAAAT 294470 Query 3518 GT--GCCCGAGGCGAAGCCGAGGGCATCATGGCACGCAGTTCAGGGCTCTCAAATTTCTG 3575 || ||||||||||||||||| ||||| |||||||| |||| || | |||| Sbjct 294469 AGACGCACGAGGCGAAGCCGAGGGAGTCATG-CACGCAGTGGCGGGCCTTCGACTTTCAC 294411 Query 3576 CCCATGTAGTGTATACTATTTTT 3598 | | |||| ||||||||||||| Sbjct 294410 CTCTTGTACCGTATACTATTTTT 294388 Score = 80.6 bits (88), Expect = 3e-11 Identities = 106/143 (74%), Gaps = 7/143 (5%) Strand=Plus/Minus Query 4352 AAATAGTATATTACACTAC---AAGGGCAGAAAGTTTGAGATTCCTGCACTGCGTGCCAT 4408 ||||||||||||||| ||| ||| | |||||| || |||| |||||| || || Sbjct 294528 AAATAGTATATTACAGTACGGTAAGAGATGAAAGTCGAAG-TTCCGCCACTGCTTGAAAT 294470 Query 4409 AT--GCCCGAGGCGAAGCCGAGGGCATCATGGCACGCAGTTCAGGGCTCTCAAATTTCTG 4466 | || ||||||||||||||||| |||| ||||||||| |||| || | |||| Sbjct 294469 AGACGCACGAGGCGAAGCCGAGGGAGTCAT-GCACGCAGTGGCGGGCCTTCGACTTTCAC 294411 Query 4467 CCCATGTAGTGTATACTAGTTTT 4489 | | |||| |||||||| |||| Sbjct 294410 CTCTTGTACCGTATACTATTTTT 294388 >seq6397 Length=778929 Score = 82.4 bits (90), Expect = 9e-12 Identities = 113/156 (72%), Gaps = 3/156 (2%) Strand=Plus/Plus Query 3463 AATAGTATATTACACTACAAGGGCAGAAAGTTGAGATTCCTGCACTGCGCGCCATGTGC- 3521 |||||||||| || |||||| | |||||| || || | || ||| | || | | Sbjct 647125 AATAGTATATGACGGTACAAGAGATGAAAGTCGAAGTTTCGCCATTGCTTGAAATTTACG 647184 Query 3522 -CCGAGGCGAAGCCGAGGGCATCATGGCACGCAGTTCAGGGCTCTCAAATTTCTGCCCAT 3580 |||||||||||||||||||||||| |||||||||| ||| || | |||| | Sbjct 647185 TCCGAGGCGAAGCCGAGGGCATCAT-GCACGCAGTTGCCGGCCTTCGACTTTCGTCTTGC 647243 Query 3581 GTAGTGTATACTATTTTTCTTGCTATGCGGTCGAAA 3616 | | ||||||||||||||||| | |||| |||| Sbjct 647244 GCACCGTATACTATTTTTCTTGATTCTCGGTGGAAA 647279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 61191006269456