Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_006653.1 Length=26062 Score E Sequences producing significant alignments: (Bits) Value seq3610 91.5 2e-14 seq7573 80.6 4e-11 seq6397 80.6 4e-11 >seq3610 Length=3125 Score = 91.5 bits (100), Expect = 2e-14 Identities = 106/141 (75%), Gaps = 3/141 (2%) Strand=Plus/Minus Query 20695 CAAGAAAAATAGTATACACTACATGGGCAGAAATTTGAGAGCCCTGAACTGCGTGCCATG 20754 ||||||||||||||||| ||| | | |||| | | |||| ||||||||| ||| Sbjct 2615 CAAGAAAAATAGTATACGGTACGCGAGACGAAAGTCGGAGGCCCGCCACTGCGTGC-ATG 2557 Query 20755 ATGCCCTCGGCTTCGCCTCGGGCA--CATGGCGCGCAGTGCAGGAATCTCAACTTTCTGC 20812 | ||||||||||||||||| ||| || | |||||| |||| || |||||| | Sbjct 2556 ACGCCCTCGGCTTCGCCTCTGGCGGCCACTTCAAGCAGTGGCGGAACTTCGACTTTCGCC 2497 Query 20813 CCTTGTAGTGTAATATACTAT 20833 |||||| ||||||||||||| Sbjct 2496 TCTTGTACTGTAATATACTAT 2476 Score = 86.0 bits (94), Expect = 1e-12 Identities = 111/150 (74%), Gaps = 4/150 (3%) Strand=Plus/Minus Query 5332 AAGAAAACTAGTATACACTACATGGGCAGAAATTTGAGAGCCCTGAACTGCGTGCCATGA 5391 ||||||| |||||||| ||| | | |||| | | |||| ||||||||| |||| Sbjct 2614 AAGAAAAATAGTATACGGTACGCGAGACGAAAGTCGGAGGCCCGCCACTGCGTGC-ATGA 2556 Query 5392 TGCCCTCGGCTTCGCCTCGGGCAT--ATGGCGCGCAGTGCAGGAATCTCAGACTTTCTGC 5449 ||||||||||||||||| ||| | | |||||| |||| || ||||||| | Sbjct 2555 CGCCCTCGGCTTCGCCTCTGGCGGCCACTTCAAGCAGTGGCGGAACTTC-GACTTTCGCC 2497 Query 5450 CCTTGTAGTGTAATATACTATTTCTCTAAA 5479 |||||| ||||||||||||||| || ||| Sbjct 2496 TCTTGTACTGTAATATACTATTTTTCAAAA 2467 >seq7573 Length=1493758 Score = 80.6 bits (88), Expect = 4e-11 Identities = 106/143 (74%), Gaps = 7/143 (5%) Strand=Plus/Plus Query 5335 AAAACTAGTATACACTACATGGGCAGAAATTTGAGAGCCCTGAACTGCGTGCCATGATGC 5394 |||| |||||||| |||| | | |||| | || |||| ||||||||| |||| | Sbjct 294388 AAAAATAGTATACGGTACAAGAGGTGAAAGTCGAAGGCCCGCCACTGCGTGC-ATGACTC 294446 Query 5395 CCTCGGCTTCGCCTCGGGC--ATATGGCGCGCAGTGCAGGAATCTCAGACTTTCTGCCCT 5452 |||||||||||||||| || ||| | |||||| |||| || ||||||| | || Sbjct 294447 CCTCGGCTTCGCCTCGTGCGTCTATTTCAAGCAGTGGCGGAA-CTTCGACTTTCATCTCT 294505 Query 5453 T---GTAGTGTAATATACTATTT 5472 | ||| ||||||||||||||| Sbjct 294506 TACCGTACTGTAATATACTATTT 294528 >seq6397 Length=778929 Score = 80.6 bits (88), Expect = 4e-11 Identities = 112/155 (72%), Gaps = 3/155 (2%) Strand=Plus/Minus Query 20681 TTTCGACCGCATAGCAAGAAAAATAGTATACACTACATGGGCAGAAATTTGAGAGCCCTG 20740 |||| |||| | ||||||||||||||||| | | | |||| | || ||| Sbjct 647279 TTTCCACCGAGAATCAAGAAAAATAGTATACGGTGCGCAAGACGAAAGTCGAAGGCCGGC 647220 Query 20741 AACTGCGTGCCATGATGCCCTCGGCTTCGCCTCGG--GCACATGGCGCGCAGTGCAGGAA 20798 |||||||||| |||||||||||||||||||||||| | | || | ||| || | || Sbjct 647219 AACTGCGTGC-ATGATGCCCTCGGCTTCGCCTCGGACGTAAATTTCAAGCAATGGCGAAA 647161 Query 20799 TCTCAACTTTCTGCCCTTGTAGTGTAATATACTAT 20833 || |||||| | |||||| || ||||||||| Sbjct 647160 CTTCGACTTTCATCTCTTGTACCGTCATATACTAT 647126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 83272115570100