Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_006662.1 Length=17477 Score E Sequences producing significant alignments: (Bits) Value seq3610 86.0 7e-13 seq7573 80.6 3e-11 >seq3610 Length=3125 Score = 86.0 bits (94), Expect = 7e-13 Identities = 111/150 (74%), Gaps = 4/150 (3%) Strand=Plus/Plus Query 4744 TTTAGAGAAATAGTATATTACACTACAAGGGCAGAAAGTCTGAGATTCCTGCACTGCGCG 4803 ||| || ||||||||||||||| |||||| | ||||||| || |||| |||||| | Sbjct 2467 TTTTGAAAAATAGTATATTACAGTACAAGAGGCGAAAGTC-GAAGTTCCGCCACTGCTTG 2525 Query 4804 CCAT--ATGCCCGAGGCGAAGCCGAGGGCATCATGGCACGCAGTTCAGGGCTCTCAAATT 4861 | ||| ||||||||||||||||| |||| ||||||||| |||| | | || Sbjct 2526 AAGTGGCCGCCAGAGGCGAAGCCGAGGGCGTCAT-GCACGCAGTGGCGGGCCTCCGACTT 2584 Query 4862 TCTGCCCATGTAGTGTATACTAGTTTTCTT 4891 || | | ||| |||||||| ||||||| Sbjct 2585 TCGTCTCGCGTACCGTATACTATTTTTCTT 2614 >seq7573 Length=1493758 Score = 80.6 bits (88), Expect = 3e-11 Identities = 106/143 (74%), Gaps = 7/143 (5%) Strand=Plus/Minus Query 4751 AAATAGTATATTACACTAC---AAGGGCAGAAAGTCTGAGATTCCTGCACTGCGCGCCAT 4807 ||||||||||||||| ||| ||| | ||||||| || |||| |||||| | || Sbjct 294528 AAATAGTATATTACAGTACGGTAAGAGATGAAAGTCGAAG-TTCCGCCACTGCTTGAAAT 294470 Query 4808 AT--GCCCGAGGCGAAGCCGAGGGCATCATGGCACGCAGTTCAGGGCTCTCAAATTTCTG 4865 | || ||||||||||||||||| |||| ||||||||| |||| || | |||| Sbjct 294469 AGACGCACGAGGCGAAGCCGAGGGAGTCAT-GCACGCAGTGGCGGGCCTTCGACTTTCAC 294411 Query 4866 CCCATGTAGTGTATACTAGTTTT 4888 | | |||| |||||||| |||| Sbjct 294410 CTCTTGTACCGTATACTATTTTT 294388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 55802716447360