Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq7343 114 1e-20 >seq7343 Length=933009 Score = 114 bits (126), Expect = 1e-20 Identities = 345/528 (65%), Gaps = 8/528 (2%) Strand=Plus/Minus Query 21473 AAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTT 21532 ||||| ||||| ||||||||||| ||||| || || || | |||||| |||||||| Sbjct 374987 AAACAGGCAAAGTCACAATGCAATCCTTCGTCTCTGGAGATCAGTTCATTTGAAAATGTC 374928 Query 21533 AAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT-CCTGAAAA 21591 | |||||||| || || | || || | ||| || || || ||||| ||| || || || Sbjct 374927 AGGCCGGGCATCAAGCCGCGTTTCTTAAGCCAGAAGATCGAAGCAAA-GCTGCCAGAGAA 374869 Query 21592 GAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGAT-TCTTTAT 21650 || || || || || || || || || || | || || || |||| || |||| Sbjct 374868 AAATATTCCTTCGACAGCTGCGAAAGCGACGATTCTCTCTCCAAATGTGGACGTCTTGGA 374809 Query 21651 CCAATATCCATTTTTCTGCCCATTTTGCCTTT-TCTTTAATACAATCAATTGTATCAATA 21709 | ||||| || ||||| | || || || ||| ||| || ||| ||||| Sbjct 374808 GCTG-ATCCACTTAAGCGCCCAGTCCGCTTTCCTCCTTAC-ACAGGGAAGTGTTTCAATT 374751 Query 21710 GCTTTTAA-AAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACT 21768 || || || |||| | |||| | | | |||| | ||| || Sbjct 374750 GCGTTAAACAAGAA-ACTTTTCTGAACAGGATCGCTGATGTAGGTCTCAATCAGCATGCT 374692 Query 21769 ATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTC 21828 ||||||||||| || |||||||| || ||||| ||||| || || |||||||| ||||| Sbjct 374691 GTACATTTCAGAGTGAATATTTTCGATGGCTATTTGAAACCCATAGAAACATCTAGCCTC 374632 Query 21829 TGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACT 21888 | ||| || || ||||||| | | ||||| || || || |||||| Sbjct 374631 GGTTACTTGCACTTCCTGGCTGAATCGTTCCACAAGATTTTCGTTCACAATGCCATCAGA 374572 Query 21889 GGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTT 21948 || || ||||| |||| | || ||| || | | ||| || | ||| | || || Sbjct 374571 TGCTGCGAAAAAGGCCAGCACATGCGATATGAAGTGCCTTTCATTGTTTGTCAGCTTATT 374512 Query 21949 CCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAA 21996 ||||| | |||| |||| || |||||||| || |||||||| Sbjct 374511 CCAATGATCGAGGTCTTGAGATAGGTCCACTTCTTCCGTGGTCCAAAA 374464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531846359953120