Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq6955 118 1e-21 seq7149 91.5 1e-13 seq5761 89.7 5e-13 seq7010 86.0 6e-12 >seq6955 Length=469295 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | ||||||||||| | ||||| ||| | || || | ||| | ||| || Sbjct 94639 AATGCAAATTTTTGTAAAAACCCTTACTGGCAAAACAATTACACTTGAAGTCGAACCATC 94698 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 || ||||| || | || ||| |||||| ||||| ||||| || ||||| || || Sbjct 94699 TGATACCATTGAAAATGTTAAAGCCAAGATTCAGGACAAGGAAGGAATTCCTCCAGACCA 94758 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 ||| || | |||| | ||||||||| | ||||||| | | | ||||| || Sbjct 94759 ACAGAGGTTAATTTTTGCCGGCAAACAGTTAGAAGATGGACGTACATTGTCTGACTACAA 94818 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||| || |||||||| ||| | ||| |||| ||||||| |||||||||| Sbjct 94819 CATCCAGAAAGAATCCACTTTACATTTGGTTTTGAGACTGAGAGGAGGAA 94868 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || || ||||| ||| | ||||| | || | ||| || Sbjct 94412 ATGCAGATTTTCGTGAAGACTTTGACTGGCAAAACTATCACACTTGAGGTTGAACCATCA 94471 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || ||| | || ||| |||||| ||||| ||||| || || || || ||| Sbjct 94472 GACACTATTGAGAACGTTAAAGCCAAGATTCAAGACAAGGAAGGAATTCCCCCAGACCAA 94531 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| || | |||| || |||||||| | ||||||| | | | | || |||||| Sbjct 94532 CAACGATTGATTTTCGCTGGCAAACAGTTGGAAGATGGCCGCACCCTATCAGATTATAAC 94591 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 || ||||||||||| ||| | ||| |||| ||||| | ||||| |||| Sbjct 94592 ATCCAAAAAGAATCCACTCTGCATTTGGTGTTGAGATTGAGAGGTGGAA 94640 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | || || ||||| | ||||||||| | ||||| | ||| | ||| | Sbjct 95551 AATGCAAATTTTCGTGAAAACCCTGACTGGAAAAACTATCACTTTGGAAGTGGAACCCTC 95610 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||||||||| | || ||| ||||| ||||||||||| || ||||| || || Sbjct 95611 AGACACCATCGAGAATGTTAAAGCTAAGATCCAGGACAAAGAAGGCATTCCTCCAGACCA 95670 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATA 26946 || || | |||| || ||||||||| | ||||| | | || | | | || || | Sbjct 95671 GCAGAGGTTGATTTTCGCAGGCAAACAATTGGAAGACGGCCG-CACTTTATCGGATTACA 95729 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 |||| || || ||||| ||| | || |||| || || | |||||||||| Sbjct 95730 ACATACAGAAGGAATCCACTCTTCACTTGGTGCTCAGGTTGAGAGGAGGAA 95780 Score = 102 bits (112), Expect = 8e-17 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | ||||| ||||| | ||||| ||| | || || | ||| | ||| || Sbjct 95779 AATGCAGATTTTTGTTAAAACTCTGACTGGCAAAACTATTACACTTGAAGTCGAACCATC 95838 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 || |||||||| | || || |||||| ||||| ||||| || ||||| || || Sbjct 95839 TGATACCATCGAAAATGTTAAGGCAAAGATCCAGGACAAGGAAGGAATTCCTCCAGACCA 95898 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 ||| ||||| |||| || ||||||||| | ||||||| | | | | || ||||| Sbjct 95899 ACAGAGACTGATTTTCGCAGGCAAACAATTGGAAGATGGCCGCACCCTATCAGATTATAA 95958 Query 26948 CATTCAAAAAGAATCTACT 26966 ||| ||||||||||| ||| Sbjct 95959 CATCCAAAAAGAATCCACT 95977 Score = 100 bits (110), Expect = 3e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 26763 AACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAA 26822 |||| ||||| | || || |||||||||||||||||| | ||||| | ||| | ||| Sbjct 94178 AACAGGATGCAGATCTTCGTGAAAACATTAACTGGAAAAACCATCACTTTGGAAGTGGAA 94237 Query 26823 TCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCC 26882 | ||||| |||||| | || || || || ||||||||||| || || || Sbjct 94238 CCTTCAGACACAATCGAGAATGTTAAGGCTAAAATCCAGGACAAAGAAGGAATCCCCCCA 94297 Query 26883 GATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGAC 26942 || || || | ||||||| || || || ||| | ||||||| | | | |||| Sbjct 94298 GACCAGCAGCGTCTCATTTTCGCTGGAAAGCAATTGGAAGATGGACGCACTCTTTCCGAC 94357 Query 26943 TATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||| || ||||| |||||| | || |||| || | || |||||||| Sbjct 94358 TACAACATCCAGAAAGAGTCTACTCTTCACTTGGTTTTGCGGCTGAGAGGAGG 94410 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | ||||| ||||| | ||||||||| | || || | ||| | || | Sbjct 95095 AATGCAAATTTTTGTCAAAACTCTTACTGGAAAAACCATTACACTTGAAGTCGAGCCTTC 95154 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 || || || || | || ||| ||||| ||||||||||| || || || || || Sbjct 95155 TGATACTATTGAAAATGTTAAAGCCAAGATCCAGGACAAAGAAGGAATTCCCCCAGACCA 95214 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 ||| ||||| |||| || || |||||| | ||||| | ||| | || || || Sbjct 95215 ACAGAGACTGATTTTCGCAGGAAAACAATTGGAAGACGGCCGAACTTTGTCTGATTACAA 95274 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||| || || ||||| ||| | || |||| || || | ||||| |||| Sbjct 95275 CATCCAGAAGGAATCCACTCTTCACTTGGTGCTCAGGTTGAGAGGTGGAA 95324 >seq7149 Length=218332 Score = 91.5 bits (100), Expect = 1e-13 Identities = 296/455 (65%), Gaps = 6/455 (1%) Strand=Plus/Minus Query 147114 ACGGTGAATTGAATCGTGTTTGCTGCGGGTTTGGTTCTCAAATAGTACATGCCCGTTTTT 147173 |||||||| || || | || || || || |||||||||||||| ||||| || ||||| Sbjct 124029 ACGGTGAACTGGATGGGATTGGCGGCCGGCTTGGTTCTCAAATAATACATTCCGGTTTTC 123970 Query 147174 AAACCCTTTTCCCAAGAATAGTCGTGAATGGATGATAAAACTTTATAGGTTGGATTGGCC 147233 | ||||| | |||| || ||| || || || | ||| ||| | | || | Sbjct 123969 AGGCCCTTCTTCCAACCGTAAAAGTGCATCGAGGACAGAACGCCGTAGCTGGCTTTTTCA 123910 Query 147234 ACAAAAAGATTGAGCGATTGGCTCTGATCGATGTAAGGTCCCCGCTCTGCGGCCATGTCC 147293 | | || | |||||| || ||||| | | || || || |||||||| || Sbjct 123909 ATGTGGATGTTCAAACTTTGGCTTTGGTCGATAAATGCGCCGCGATCCGCGGCCATATCG 123850 Query 147294 AACACTACTTTTTGTTTAATTTCCCAAGCGGTCTTGAAGAGCGCCTTGATATTGTGTGGA 147353 | | |||||||| ||||||||| | |||||| ||| ||||| | | | || Sbjct 123849 AGGATGACTTTTTGCGAAATTTCCCACACCGTCTTGTAGATTGCCTTCAAGTCATCAGGG 123790 Query 147354 ATTTCATCAATATTTTGTACAGATCCGTTGTTTTTAATAATTT---TTATCATGATATCT 147410 || || || ||||||| || |||| || || | || | |||| | || Sbjct 123789 ATGTCGGGGATGTTTTGTATCGAGCCGTGATTGGCTATGACTTGGTTCTTCATCGTGTC- 123731 Query 147411 GTCGAATATACGTTGGTGTCTACGAGTTTATCGACGAGATGCTGATTGACCACTTGATAC 147470 ||| | | | | | | | ||| | || ||||||||||||||||||||| || Sbjct 123730 GTCCCACAGTCCTCTTTCGGT-CAAGTCCTT-GAGAAGATGCTGATTGACCACTTGAAAC 123673 Query 147471 TCGCCCGACAGAACTCTTCGTACGTACAAATTACTAGTAAACGGCTCGAACGACTCGTTG 147530 || || ||||| ||||| || ||| | |||||||| ||||||||| ||||| Sbjct 123672 TCCCCGGACAGGACTCTCCGAGTGTAAATGTTACTAGTGTACGGCTCGACGCTTTCGTTA 123613 Query 147531 TTACCTAGAATCTGTGCAGTCGTTGCCGTCGGCAT 147565 || || || || || || || | ||||| ||||| Sbjct 123612 TTTCCCAGGATTTGGGCGGTTGAAGCCGTGGGCAT 123578 >seq5761 Length=8615 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || ||||| | ||||| || | |||||| | || | || || Sbjct 99 ATGCAAATTTTCGTGAAAACTCTCACTGGTAAGACCATCACCCTTGAGGTCGAGCCATCA 158 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | || ||| || ||| ||||| ||||| |||||||||||||| Sbjct 159 GACACCATCGAAAATGTAAAAGCGAAAATTCAGGACAAGGAAGGCATACCTCCCGATCAG 218 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | | || | || || || || | ||||||| | | | | |||||| ||| Sbjct 219 CAGCGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACCCTATCCGACTACAAC 278 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || || ||||| || | ||| |||| || ||| | |||||||| Sbjct 279 ATCCAGAAGGAATCCACCCTTCATTTGGTGCTCAGATTGAGAGGAGG 325 >seq7010 Length=35453 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || ||||| | ||||| || | |||||| | || | || || Sbjct 8906 ATGCAAATTTTCGTGAAAACTCTCACTGGTAAGACCATCACCCTTGAGGTCGAGCCATCA 8847 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | || ||| || ||| ||||| ||||| |||||||||||||| Sbjct 8846 GACACCATCGAAAATGTAAAAGCGAAAATTCAGGACAAGGAAGGCATACCTCCCGATCAG 8787 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | | || | || || || || | ||||||| | | | | |||||| ||| Sbjct 8786 CAGCGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACCCTATCCGACTACAAC 8727 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || || ||||| || | || |||| || ||| | |||||||| Sbjct 8726 ATCCAGAAGGAATCCACCCTTCACTTGGTGCTCAGATTGAGAGGAGG 8680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478613408903360