Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq7149 143 7e-29 seq7343 111 4e-19 >seq7149 Length=218332 Score = 143 bits (158), Expect = 7e-29 Identities = 227/322 (70%), Gaps = 4/322 (1%) Strand=Plus/Plus Query 364750 GCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCG 364809 || || |||||||||||||| || || || ||||| ||||| ||||| || |||| ||| Sbjct 123572 GCCCCAATGCCCACGGCTTCAACCGCCCAAATCCTGGGAAATAACGAAAGCGTCGAGCCG 123631 Query 364810 TTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAG 364869 | || || || |||| | || | || || ||||| || |||| || || ||| || Sbjct 123632 TACACTAGTAACATTTACACTCGGAGAGTCCTGTCCGGGGAGTTTCAAGTGGTCAATCAG 123691 Query 364870 TACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATC 364929 | || ||||||| | |||| | || ||||||| |||| ||||||||| | || Sbjct 123692 CATCTTCTCAAGGACTTGACCGAAAGAGGACTGTGGGACGACACGATGAAGAACCAAGTC 123751 Query 364930 ATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATT 364989 || ||| | | || || | || ||||| || | | || || || ||||| | || Sbjct 123752 ATAGCCAATCACGGCTCGATACAAAACATCCCCGACATCCCTGATGACTTGAAGGCAATC 123811 Query 364990 TACAAAACCGTATGGGAAATTTC-CATGCGAACTC-TCATTGATATGGCGGCCGATCGCG 365047 ||||| || || ||||||||||| || || || || | |||||||| || ||||||| Sbjct 123812 TACAAGACGGTGTGGGAAATTTCGCA--AAAAGTCATCCTCGATATGGCCGCGGATCGCG 123869 Query 365048 GTGCTTTTATCTGTCAGAGCCA 365069 | || |||||| || ||||| Sbjct 123870 GCGCATTTATCGACCAAAGCCA 123891 Score = 93.3 bits (102), Expect = 1e-13 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 364108 CCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTAT 364167 || || ||| |||| ||| || | || | ||||| | || || || || ||||| Sbjct 122871 CCAGCTCAGGAGCTTTGGCGCGCTGTTATCGCCTCGCAAGTGGAAACCGGGACGCCCTAC 122930 Query 364168 ATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAG 364227 ||| |||||||||| | ||||||||||| ||||||||| || |||| || || || || Sbjct 122931 ATGCTGTACAAAGACGCCTGCAACCGCAAATCCAACCAGAAGAACCTGGGCACGATAAAG 122990 Query 364228 CAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGT 364287 ||||| || || || || || |||||||||| | |||| || | ||||| || Sbjct 122991 AGCAGCAATCTTTGCACGGAAATCGTTGAATACACTTCAGCCGATGAAATCGCCGTTTGC 123050 Query 364288 AACCTTGCGTC 364298 || || || || Sbjct 123051 AATCTGGCCTC 123061 >seq7343 Length=933009 Score = 111 bits (122), Expect = 4e-19 Identities = 298/444 (67%), Gaps = 19/444 (4%) Strand=Plus/Plus Query 22513 GTTGAAGGCATTTTCTTTTCTGG-AGCATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGC 22571 || ||||| || || || ||||| ||| ||| | | ||||| ||||| || ||||| | Sbjct 374854 GTCGAAGGAATATTTTTCTCTGGCAGC-TTTGCTTCGATCTTCTGGCTTAAGAAACGCGG 374912 Query 22572 AATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAGGGTCTTCATAC 22631 | ||||| || || || ||||||||||| | || | |||| || || | ||| Sbjct 374913 CTTGATGCCCGGCCTGACATTTTCAAATGAACTGATCTCCAGAGACGAAGGATTGCATTG 374972 Query 22632 CGATTTTGCGTGTATGCTATATCGGAATC--ATATCATTCATAAA-CTTCCATATGAAAC 22688 || ||||| ||| | |||| || || || || |||| ||| | |||| | |||| Sbjct 374973 TGACTTTGCCTGTTTACTAT-TC----TCCTATCTCGTTCAAAAACCCTCCA-AAGAAAG 375026 Query 22689 TGTACTTGATATTATTACAAATGCAGTTGAACTTGAACGTCTATTTATTTGCGAGGCGTT 22748 || | |||||| | ||||||||| | |||| ||| | | || || | Sbjct 375027 AGTGACGGGCATTATTCGAGATGCAGTTGTTATCGAACAGGAGTTTCTGTCGGATGCACT 375086 Query 22749 ACCAGTAAGTCTCATTGGTATCAA-TGCCGAATCA-ATG--AGTACATATATTAAATTTG 22804 || || ||||| || || || || ||| ||| || |||||||| |||||| Sbjct 375087 GCCTGTTAGTCTTATCGGGATGAACTGCAAGCTCATGTGCCAGTACATA----GAATTTG 375142 Query 22805 TTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTATAACGTCGTTAATCCAT 22864 | || || || || |||| |||||||| || |||| |||||| ||| |||||| | Sbjct 375143 TGGCTGACCGACTGCTAATGGAACTCGGTTGTGAAAAGGTTTATAATGTCACTAATCCGT 375202 Query 22865 TTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAAAGAGTTG 22924 | || | ||| | || || || || |||||||| || |||||||| | || | Sbjct 375203 TCGATTTTATGTCGATAATATCTACAGAGGGCAAGACCAACTTTTTCGAAAAGAAGGTCG 375262 Query 22925 GTGAATACCAAAAAGCAGGTGTTA 22948 | |||||||| |||| |||||||| Sbjct 375263 GCGAATACCAGAAAGTAGGTGTTA 375286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303216866803016