Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq6955 129 5e-25 seq5761 125 6e-24 seq7010 120 3e-22 seq7343 87.8 2e-12 >seq6955 Length=469295 Score = 129 bits (142), Expect = 5e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | || || ||||| | ||||||||| | || || | ||||| || || Sbjct 95551 AATGCAAATTTTCGTGAAAACCCTGACTGGAAAAACTATCACTTTGGAAGTGGAACCCTC 95610 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||||||| | || ||| ||||| |||||||||||||| ||||| || || Sbjct 95611 AGACACCATCGAGAATGTTAAAGCTAAGATCCAGGACAAAGAAGGCATTCCTCCAGACCA 95670 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATA 24168 ||||| |||||| || ||||| ||| | ||||| | | | || | | | ||||| | Sbjct 95671 GCAGAGGTTGATTTTCGCAGGCAAACAATTGGAAGACGGCCG-CACTTTATCGGATTACA 95729 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 |||| || || ||||| || |||| || ||| | || |||||||||||| Sbjct 95730 ACATACAGAAGGAATCCACTCTTCACTTGGTGCTCAGGTTGAGAGGAGGA 95779 Score = 122 bits (134), Expect = 7e-23 Identities = 148/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||| ||||| | ||||| ||| | ||||| | |||||||| ||| Sbjct 95779 AATGCAGATTTTTGTTAAAACTCTGACTGGCAAAACTATTACACTTGAAGTCGAA-CCAT 95837 Query 24050 C-GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATC 24108 | || |||||||| | || || |||||| ||||| ||||| || ||||| || | Sbjct 95838 CTGATACCATCGAAAATGTTAAGGCAAAGATCCAGGACAAGGAAGGAATTCCTCCAGACC 95897 Query 24109 AACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATA 24168 ||||||||||||||| || ||||| ||| | ||||||| | | | | | ||||||| Sbjct 95898 AACAGAGACTGATTTTCGCAGGCAAACAATTGGAAGATGGCCGCACCCTATCAGATTATA 95957 Query 24169 ACATTCAAAAAGAATCTAC 24187 |||| ||||||||||| || Sbjct 95958 ACATCCAAAAAGAATCCAC 95976 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| ||||| | ||||||||| | ||||| | ||||||||| | Sbjct 95095 AATGCAAATTTTTGTCAAAACTCTTACTGGAAAAACCATTACACTTGAAGTCGAGCCTTC 95154 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || || || | || ||| ||||| ||||||||||| || || || || || Sbjct 95155 TGATACTATTGAAAATGTTAAAGCCAAGATCCAGGACAAAGAAGGAATTCCCCCAGACCA 95214 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 |||||||||||||| || || || ||| | ||||| | | ||| | ||||| || Sbjct 95215 ACAGAGACTGATTTTCGCAGGAAAACAATTGGAAGACGGCCGAACTTTGTCTGATTACAA 95274 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||| || || ||||| || |||| || ||| | || |||||||| ||| Sbjct 95275 CATCCAGAAGGAATCCACTCTTCACTTGGTGCTCAGGTTGAGAGGTGGA 95323 Score = 118 bits (130), Expect = 9e-22 Identities = 169/232 (73%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||||||||| | ||||| ||| | ||||| | |||||||| ||| Sbjct 94639 AATGCAAATTTTTGTAAAAACCCTTACTGGCAAAACAATTACACTTGAAGTCGA-ACCAT 94697 Query 24050 C-GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATC 24108 | || ||||| || | || ||| |||||| ||||| ||||| || ||||| || | Sbjct 94698 CTGATACCATTGAAAATGTTAAAGCCAAGATTCAGGACAAGGAAGGAATTCCTCCAGACC 94757 Query 24109 AACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGA-AACGTCAGCGATTA 24166 ||||||| | |||| | |||||| || | |||||| ||| | | ||| || || Sbjct 94758 AACAGAGGTTAATTTTTGCCGGCAAACAGTTAGAAGATGGACGTACATTGTC--TGACTA 94815 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||||| || |||||||| || | ||||| || || ||| ||||||||||| Sbjct 94816 CAACATCCAGAAAGAATCCACTTTACATTTGGTTTTGAGACTGAGAGGAGGA 94867 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || || ||||| ||| | || || | || || || ||| | Sbjct 94412 ATGCAGATTTTCGTGAAGACTTTGACTGGCAAAACTATCACACTTGAGGTTGAA-CCATC 94470 Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || ||| | || ||| |||||| ||||| ||||| || || || || || Sbjct 94471 AGACACTATTGAGAACGTTAAAGCCAAGATTCAAGACAAGGAAGGAATTCCCCCAGACCA 94530 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| || |||||| || ||||| || | ||||||| | | | | | |||||||| Sbjct 94531 ACAACGATTGATTTTCGCTGGCAAACAGTTGGAAGATGGCCGCACCCTATCAGATTATAA 94590 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||| ||||||||||| || | ||||| ||||| ||||||||||| ||| Sbjct 94591 CATCCAAAAAGAATCCACTCTGCATTTGGTGTTGAGATTGAGAGGTGGA 94639 Score = 105 bits (116), Expect = 6e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | || || ||||| ||||| || ||| ||||||| | ||||| || || Sbjct 94867 AATGCAAATCTTCGTGAAAACTTTAACCGGCAAAACGATTACTTTGGAAGTGGAACCCTC 94926 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || ||| | || || ||||| ||||| |||||||| || || || || Sbjct 94927 AGACACAATTGAGAACGTTAAGGCGAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCA 94986 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATA 24168 |||||| |||| | | || ||||| | || |||| | | | | | | || || | Sbjct 94987 GCAGAGATTGATCTTTGCAGGAAAGCAGTTGGAGGATGGACGCA-CTTTATCTGACTACA 95045 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 |||||||||| || || || | ||||| ||||| |||||||| |||||| Sbjct 95046 ACATTCAAAAGGAGTCCACTTTGCATTTGGTGTTGAGATTGAGGGGAGGA 95095 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| ||||| | ||||||||| | || || | ||||| || ||| Sbjct 95323 AATGCAAATCTTTGTTAAAACCCTGACTGGAAAAACCATCACTTTGGAAGTGGAAGCCTC 95382 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || |||||||| | || ||| ||||| ||||| |||||||| || || || || Sbjct 95383 AGATACCATCGAAAACGTTAAAGCTAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCA 95442 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | || || | | || ||||| | || |||| | | | | ||| || || Sbjct 95443 GCAGCGTCTCATCTTTGCTGGAAAGCAGTTGGAGGATGGCCGCACACTTTCCGACTACAA 95502 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||| ||||| ||||| || |||| || ||| | || ||||||||||| Sbjct 95503 CATCCAAAAGGAATCCACCCTTCACTTGGTGCTCAGGCTGAGAGGAGGA 95551 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 23985 AACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAG 24044 |||| ||||| | || || |||||||||||||||||| | || || | ||||| || Sbjct 94178 AACAGGATGCAGATCTTCGTGAAAACATTAACTGGAAAAACCATCACTTTGGAAGTGGAA 94237 Query 24045 GCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCC 24104 | ||||| |||||| | || || || || ||||||||||| || || || Sbjct 94238 CCTTCAGACACAATCGAGAATGTTAAGGCTAAAATCCAGGACAAAGAAGGAATCCCCCCA 94297 Query 24105 GATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGAT 24164 || || ||| | || |||| || || |||||| | ||||||| | | | ||| Sbjct 94298 GACCAGCAGCGTCTCATTTTCGCTGGAAAGCAATTGGAAGATGGACGCACTCTTTCCGAC 94357 Query 24165 TATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || ||||| || ||||| ||||| |||| || || || | |||||||||| Sbjct 94358 TACAACATCCAGAAAGAGTCTACTCTTCACTTGGTTTTGCGGCTGAGAGGAGG 94410 >seq5761 Length=8615 Score = 125 bits (138), Expect = 6e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| | ||||| || | || ||| | || |||||| ||| | Sbjct 99 ATGCAAATTTTCGTGAAAACTCTCACTGGTAAGACCATCACCCTTGAGGTCGAG-CCATC 157 Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||||| | || ||| || ||| ||||| |||||||||||||||||||| Sbjct 158 AGACACCATCGAAAATGTAAAAGCGAAAATTCAGGACAAGGAAGGCATACCTCCCGATCA 217 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | |||| | || || ||||| | ||||||| | | | | ||| || || Sbjct 218 GCAGCGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACCCTATCCGACTACAA 277 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||| || || ||||| || ||||||| ||| | |||||||||||||| Sbjct 278 CATCCAGAAGGAATCCACCCTTCATTTGGTGCTCAGATTGAGAGGAGG 325 >seq7010 Length=35453 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| | ||||| || | || ||| | || |||||| ||| | Sbjct 8906 ATGCAAATTTTCGTGAAAACTCTCACTGGTAAGACCATCACCCTTGAGGTCGAG-CCATC 8848 Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||||| | || ||| || ||| ||||| |||||||||||||||||||| Sbjct 8847 AGACACCATCGAAAATGTAAAAGCGAAAATTCAGGACAAGGAAGGCATACCTCCCGATCA 8788 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | |||| | || || ||||| | ||||||| | | | | ||| || || Sbjct 8787 GCAGCGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACCCTATCCGACTACAA 8728 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||| || || ||||| || |||| || ||| | |||||||||||||| Sbjct 8727 CATCCAGAAGGAATCCACCCTTCACTTGGTGCTCAGATTGAGAGGAGG 8680 >seq7343 Length=933009 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/153 (75%), Gaps = 6/153 (4%) Strand=Plus/Minus Query 104592 GTATTCGCCTACTCGTTTTTCaaaaaaaTTAGTCTTGCCCTCCAGAGAAATATTATT--C 104649 ||||||||| || ||||| ||||| || ||||||||||| ||| |||||| | Sbjct 375270 GTATTCGCCGACCTTCTTTTCGAAAAAGTTGGTCTTGCCCTCTGTAGA--TATTATCGAC 375213 Query 104650 ATAAATTCGAAAGGATTCAAAGTC-TTAAAATATTTTTCGTAGCCAAGCTCGATCAACAG 104708 ||||| ||||| ||||| | | | ||| || ||||| | || || || || | ||| Sbjct 375212 ATAAAATCGAACGGATT-AGTGACATTATAAACCTTTTCACAACCGAGTTCCATTAGCAG 375154 Query 104709 TCGATCCGCCACAAATTCGATGTACTCGCACAT 104741 ||| || ||||||||||| ||||||| |||||| Sbjct 375153 TCGGTCAGCCACAAATTCTATGTACTGGCACAT 375121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429893096149140