Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq6955 116 3e-21 seq7453 84.2 2e-11 >seq6955 Length=469295 Score = 116 bits (128), Expect = 3e-21 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||||| | ||| || |||| || || ||||| ||||| ||||||||||| || | Sbjct 95778 CCTCCTCTCAACCTGAGCACCAAGTGAAGAGTGGATTCCTTCTGTATGTTGTAATCCGAT 95719 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | |||| |||||||||||||| || |||| | || ||| ||||| ||| Sbjct 95718 AAAGTGCGGCCGTCTTCCAATTGTTTGCCTGCGAAAATCAACCTCTGCTGGTCTGGAGGA 95659 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| |||||||| || || ||| || || | | | ||||| ||| ||| Sbjct 95658 ATGCCTTCTTTGTCCTGGATCTTAGCT--TTAACATTCTCGATGGTGTCTGAGGGTTCCA 95601 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||||| ||||| |||||||| ||||| ||||| || ||||| |||||| Sbjct 95600 CTTCCAAAGTGATAGTTTTTCCAGTCAGGGTTTTCACGAAAATTTGCATT 95551 Score = 107 bits (118), Expect = 2e-18 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||||| ||||| || |||| || || ||||| |||||||| ||||||||||||| Sbjct 95550 CCTCCTCTCAGCCTGAGCACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCGGAA 95491 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | |||||||| || || || ||| | || || ||||| ||||| || Sbjct 95490 AGTGTGCGGCCATCCTCCAACTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGGGGG 95431 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| || || ||| || || | | | || || || ||| Sbjct 95430 ATGCCTTCCTTGTCTTGGATCTTAGCT--TTAACGTTTTCGATGGTATCTGAGGCTTCCA 95373 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||||| |||||||||||||| ||||| ||||| ||||| || |||||| Sbjct 95372 CTTCCAAAGTGATGGTTTTTCCAGTCAGGGTTTTAACAAAGATTTGCATT 95323 Score = 104 bits (114), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| | ||| || |||| || || ||||| ||||| || |||||||| || | | Sbjct 95322 CCACCTCTCAACCTGAGCACCAAGTGAAGAGTGGATTCCTTCTGGATGTTGTAATCAGAC 95263 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | |||| ||||||||||| || || |||| || | ||||||||| || Sbjct 95262 AAAGTTCGGCCGTCTTCCAATTGTTTTCCTGCGAAAATCAGTCTCTGTTGGTCTGGGGGA 95203 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || |||||||| || || ||| || || | | | ||| || ||||| Sbjct 95202 ATTCCTTCTTTGTCCTGGATCTTGGCT--TTAACATTTTCAATAGTATCAGAAGGCTCGA 95145 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||| | || ||||||||||| || || |||||||||||||| |||||| Sbjct 95144 CTTCAAGTGTAATGGTTTTTCCAGTAAGAGTTTTGACAAAAATTTGCATT 95095 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 |||||||| |||| || |||| || || || ||||| || || ||||||||||||| Sbjct 94411 CCCTCCTCTCAGCCGCAAAACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCGGA 94352 Query 16768 CATGGTTTTGGCGTCC----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCA 16823 | || |||||| |||||||| || || || |||| || ||||| ||||| Sbjct 94351 AAGAGT----GCGTCCATCTTCCAATTGCTTTCCAGCGAAAATGAGACGCTGCTGGTCTG 94296 Query 16824 CAGGCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCT 16883 || | || |||||||| |||| ||| || | | | ||||| || | Sbjct 94295 GGGGGATTCCTTCTTTGTCCTGGATTTTAGCCTTAACATTCTCGATTGTGTCTGAAGGTT 94236 Query 16884 CCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || ||||| |||||||||||||| || | ||||| || || |||||||| Sbjct 94235 CCACTTCCAAAGTGATGGTTTTTCCAGTTAATGTTTTCACGAAGATCTGCAT 94184 >seq7453 Length=213858 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/233 (69%), Gaps = 12/233 (5%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | | ||||| |||| ||||| ||||||||||| || ||||||||||| | | Sbjct 107664 CCTCCCCTCAACCTCAACACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCCGAC 107723 Query 16769 ATGGTTTTGGCGTCC----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCAC 16824 | || |||||| |||| || ||||| || | || |||||||| ||||| Sbjct 107724 AAAGT----GCGTCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCGGG 107779 Query 16825 AGGCACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGC 16882 ||| | ||||||||| || || || ||| || || | | | ||| || ||| Sbjct 107780 AGGGATGCCCTCTTTATCCTGGATTTTGGCT--TTAACATTTTCGATAGTATCTGATGGC 107837 Query 16883 TCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || | |||||||| || || ||||| || || || || |||||||| Sbjct 107838 TCGACCTCAAGAGTGATGGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 107890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405047575762120