Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq7343 410 1e-109 seq6348 122 1e-22 seq7619 120 3e-22 seq7606 118 1e-21 >seq7343 Length=933009 Score = 410 bits (454), Expect = 1e-109 Identities = 660/939 (70%), Gaps = 16/939 (2%) Strand=Plus/Minus Query 92792 TAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCA 92851 ||||||| ||| |||||||| || || || ||||| || || || ||||| || || Sbjct 375286 TAACACCTACTTTCTGGTATTCGCCGACCTTCTTTTCGAAAAAGTTGGTCTTGCCCTCTG 375227 Query 92852 AAGATAT---CGAATTCACTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGATC 92908 |||||| ||| | | | || ||||| || | |||||| |||||||| | | Sbjct 375226 TAGATATTATCGACATAAA-ATCGAACGGATTAGTGACATTATAAACCTTTTCACA-ACC 375169 Query 92909 AACTCGTACAATAA---TCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAA 92965 | | | || || || ||||| ||||||||||||||||| |||| | | || Sbjct 375168 GAGT--TCCATTAGCAGTCGGTCAGCCACAAATTCTATGTACTGGCACATGAGCTTGCAG 375111 Query 92966 TTCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACG 93025 ||||| || | ||||| ||||| || || || | || || || | ||||| ||||| Sbjct 375110 TTCATCCCGATAAGACTAACAGGCAGTGCATCCGACAGAAACTCCTGTTCGATAACAACT 375051 Query 93026 GCTTCTTTCAAGATTTCTATTACTCTACTATTTGGTGG-TTTTTGTACGACATAATTGTA 93084 || ||| | || | | ||||| | ||||| || |||||| |||| ||| | | Sbjct 375050 GCATCTCGAATAATGCCCGTCACTCTT-TCTTTGGAGGGTTTTTGAACGAGATAGGAGAA 374992 Query 93085 CATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAA 93144 | ||| || |||||||| ||| || |||||||||| || |||| ||||| || Sbjct 374991 TAGTAAACAGGCAAAGTCACAATGCAATCCTTCGTCTCTGGAGATCAGTTCATTTGAAAA 374932 Query 93145 TGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGa 93204 ||| | || || | || || |||||||| ||||| || || |||||||| || ||||| Sbjct 374931 TGTCAGGCCGGGCATCAAGCCGCGTTTCTTAAGCCAGAAGATCGAAGCAAAGCTGCCAGA 374872 Query 93205 aaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATT 93264 |||||||| ||||| || ||||| || || || || | || |||| | | | || Sbjct 374871 GAAAAATATTCCTTCGACAGCTGCGAAAGCGACGATTCTCTCTCCAAATGTGGACGTCTT 374812 Query 93265 ACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGAT 93324 ||||||||| || | ||||| || ||||| || | | ||| || |||||||| || Sbjct 374811 GGAGCTGATCCACTTAAGCGCCCAGTCCGCTTTCCTCCTTACACAGGGAAGTGTTTCAAT 374752 Query 93325 AGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGA 93384 |||||||| | | || | || | | ||| | ||||| || || || | || Sbjct 374751 TGCGTTAAACAAGAAACTTTTCTGAACAGGATCGCTGATGTAGGTCTCAATCAGCATGCT 374692 Query 93385 ATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTC 93444 ||||||||||| || | ||| || || || ||||| || || |||||||||||||| || Sbjct 374691 GTACATTTCAGAGTGAATATTTTCGATGGCTATTTGAAACCCATAGAAACATCTAGCCTC 374632 Query 93445 CGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGA 93504 || | |||||||| || |||| || || |||||||| || || || ||||| || Sbjct 374631 GGTTACTTGCACTTCCTGGCTGAATCGTTCCACAAGATTTTCGTTCACAATGCCATCAGA 374572 Query 93505 TGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATC 93564 |||||| ||||| |||| | |||| ||| || || | |||| | | | ||||||| Sbjct 374571 TGCTGCGAAAAAGGCCAGCACATGCGATATGAAGTGCCTTTCATTGTTTGTCAGCTTATT 374512 Query 93565 CCAATCGGATAGA--TCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCT 93622 ||||| ||| || |||| || || || |||||||| ||||||||||| ||||| Sbjct 374511 CCAAT--GATCGAGGTCTTGAGATAGGTCCACTTCTTCCGTGGTCCAAAACGAGGCTTCC 374454 Query 93623 GCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTA 93682 ||||| |||||| | ||||| |||||| |||||||||| || || |||||||| || | Sbjct 374453 GCTTTCTTGTACTTTTCCCAGATGTCTGGATATTGAATGGGGAAGATGACAAACCGTCTG 374394 Query 93683 GGGTTATCTTTTAGTAACGGCTCTAGTTGTGGGTCAAAC 93721 ||||| || | || | ||||||||||| || |||||| Sbjct 374393 GGGTTTTCCCTAAGCAGCGGCTCTAGTTCAGGATCAAAC 374355 >seq6348 Length=1092195 Score = 122 bits (134), Expect = 1e-22 Identities = 86/96 (90%), Gaps = 3/96 (3%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||| | |||||| Sbjct 591318 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAAAGGGAGC 591259 Query 126323 GTGGGTTCGAACCCCACACCTGACAA-ATTATTATT 126357 |||||||||||||||||||||||||| || ||||| Sbjct 591258 GTGGGTTCGAACCCCACACCTGACAATCTTTTTATT 591223 >seq7619 Length=1054105 Score = 120 bits (132), Expect = 3e-22 Identities = 91/104 (88%), Gaps = 4/104 (4%) Strand=Plus/Minus Query 126249 TTGCGCTT-CTATTTACA-GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATC 126306 |||| ||| ||||| ||| ||||| ||||||||| |||||||||||||||||||||| || Sbjct 540090 TTGCTCTTACTATTAACATGTCAGATTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTC 540031 Query 126307 TGGTTCCC--TCGGGAGCGTGGGTTCGAACCCCACACCTGACAA 126348 |||||| | |||||||||||||||||||||||| ||||||| Sbjct 540030 TGGTTCTCGAAAGGGAGCGTGGGTTCGAACCCCACATCTGACAA 539987 >seq7606 Length=197192 Score = 118 bits (130), Expect = 1e-21 Identities = 77/84 (92%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 ||||||||||||||| |||||||||||||||||||||| |||||||| | ||||||| Sbjct 36740 GTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAAAGGGAGCG 36799 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 |||||||||||||||||||||||| Sbjct 36800 TGGGTTCGAACCCCACACCTGACA 36823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556803805297120