Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq6955 158 1e-33 seq5761 140 3e-28 seq7010 134 1e-26 >seq6955 Length=469295 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| ||||| | || || ||||| | || |||||||| ||| | | Sbjct 94640 ATGCAAATTTTTGTAAAAACCCTTACTGGCAAAACAATTACACTTGAAGTCGAACCATCT 94699 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | ||| || ||||| |||||||| || ||||| || || ||| Sbjct 94700 GATACCATTGAAAATGTTAAAGCCAAGATTCAGGACAAGGAAGGAATTCCTCCAGACCAA 94759 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || |||||||||||||||||||| ||| || || | || || |||||| Sbjct 94760 CAGAGGTTAATTTTTGCCGGCAAACAGTTAGAAGATGGACGTACATTGTCTGACTACAAC 94819 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || ||||||||||| ||||||| |||||| || || | ||||| Sbjct 94820 ATCCAGAAAGAATCCACTTTACATTTGGTTTTGAGACTGAGAGGAGG 94866 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| ||||| || || ||||| || || ||||| |||| ||||| || ||| | | Sbjct 94411 GATGCAGATTTTCGTGAAGACTTTGACTGGCAAAACTATCACACTTGAGGTTGAACCATC 94470 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || || | || | | ||| || |||||||||||||| || ||||| || || || Sbjct 94471 AGACACTATTGAGAACGTTAAAGCCAAGATTCAAGACAAGGAAGGAATTCCCCCAGACCA 94530 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 |||||| | || || || ||||||||||| || ||| ||||||| | || ||||| || Sbjct 94531 ACAACGATTGATTTTCGCTGGCAAACAGTTGGAAGATGGCCGCACCCTATCAGATTATAA 94590 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||| |||||||||||||| | ||||| || ||| ||||| | || || Sbjct 94591 CATCCAAAAAGAATCCACTCTGCATTTGGTGTTGAGATTGAGAGGTGG 94638 Score = 147 bits (162), Expect = 2e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||||||||| | || || ||||| ||||| | ||||||||| || | Sbjct 95324 ATGCAAATCTTTGTTAAAACCCTGACTGGAAAAACCATCACTTTGGAAGTGGAAGCCTCA 95383 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | | ||| || || ||||||||||| || || || || || || Sbjct 95384 GATACCATCGAAAACGTTAAAGCTAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCAG 95443 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| || || ||||| |||||| |||||| | ||||| |||||| Sbjct 95444 CAGCGTCTCATCTTTGCTGGAAAGCAGTTGGAGGATGGCCGCACACTTTCCGACTACAAC 95503 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || ||||| ||||||||| | || || || Sbjct 95504 ATCCAAAAGGAATCCACCCTTCACTTGGT 95532 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || |||||||||||||| |||||| | ||| | ||||||||| || | Sbjct 94868 ATGCAAATCTTCGTGAAAACTTTAACCGGCAAAACGATTACTTTGGAAGTGGAACCCTCA 94927 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | || || || ||||||||||| || ||||| || || || Sbjct 94928 GACACAATTGAGAACGTTAAGGCGAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCAG 94987 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||| || || ||||| |||||| ||||| | || || |||||| Sbjct 94988 CAGAGATTGATCTTTGCAGGAAAGCAGTTGGAGGATGGACGCACTTTATCTGACTACAAC 95047 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||||||| || ||||| | ||||| || ||| ||||| | ||||| Sbjct 95048 ATTCAAAAGGAGTCCACTTTGCATTTGGTGTTGAGATTGAGGGGAGG 95094 Score = 140 bits (154), Expect = 3e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||||||||||||| | || || ||||| | || |||||||| ||| | | Sbjct 95780 ATGCAGATTTTTGTTAAAACTCTGACTGGCAAAACTATTACACTTGAAGTCGAACCATCT 95839 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | || ||| || || |||||||| || ||||| || || ||| Sbjct 95840 GATACCATCGAAAATGTTAAGGCAAAGATCCAGGACAAGGAAGGAATTCCTCCAGACCAA 95899 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || || || |||||||| || || ||| ||||||| | || ||||| ||| Sbjct 95900 CAGAGACTGATTTTCGCAGGCAAACAATTGGAAGATGGCCGCACCCTATCAGATTATAAC 95959 Query 22399 ATTCAAAAAGAATCCAC 22415 || |||||||||||||| Sbjct 95960 ATCCAAAAAGAATCCAC 95976 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || ||||| | || || ||||| ||||| | ||||||||| || | Sbjct 95552 ATGCAAATTTTCGTGAAAACCCTGACTGGAAAAACTATCACTTTGGAAGTGGAACCCTCA 95611 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | ||| || || || ||||| || || ||||| || || || Sbjct 95612 GACACCATCGAGAATGTTAAAGCTAAGATCCAGGACAAAGAAGGCATTCCTCCAGACCAG 95671 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || || || |||||||| || || || |||||| | || ||||||||| Sbjct 95672 CAGAGGTTGATTTTCGCAGGCAAACAATTGGAAGACGGCCGCACTTTATCGGATTACAAC 95731 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || |||||||| Sbjct 95732 ATACAGAAGGAATCCAC 95748 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| |||||| | || || ||||| | || |||||||| || | | Sbjct 95096 ATGCAAATTTTTGTCAAAACTCTTACTGGAAAAACCATTACACTTGAAGTCGAGCCTTCT 95155 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| || || || ||||| || || ||||| || || ||| Sbjct 95156 GATACTATTGAAAATGTTAAAGCCAAGATCCAGGACAAAGAAGGAATTCCCCCAGACCAA 95215 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || || || || ||||| || || || ||| || | || ||||||||| Sbjct 95216 CAGAGACTGATTTTCGCAGGAAAACAATTGGAAGACGGCCGAACTTTGTCTGATTACAAC 95275 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || |||||||| Sbjct 95276 ATCCAGAAGGAATCCAC 95292 >seq5761 Length=8615 Score = 140 bits (154), Expect = 3e-28 Identities = 170/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||||||||| || |||||| | || ||||| || |||| ||||| || || | | Sbjct 98 GATGCAAATTTTCGTGAAAACTCTCACTGGTAAGACCATCACCCTTGAGGTCGAGCCATC 157 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || || | ||| |||||||| |||||||| || || || |||||||| Sbjct 158 AGACACCATCGAAAATGTAAAAGCGAAAATTCAGGACAAGGAAGGCATACCTCCCGATCA 217 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || ||| | || || || || || ||||| || ||| || ||| | ||||| ||||| Sbjct 218 GCAGCGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACCCTATCCGACTACAA 277 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTTT 22449 ||| || || ||||||||| | ||||| || | ||||| | |||||| || Sbjct 278 CATCCAGAAGGAATCCACCCTTCATTTGGTGCTCAGATTGAGAGGAGGTATT 329 >seq7010 Length=35453 Score = 134 bits (148), Expect = 1e-26 Identities = 169/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||||||||| || |||||| | || ||||| || |||| ||||| || || | | Sbjct 8907 GATGCAAATTTTCGTGAAAACTCTCACTGGTAAGACCATCACCCTTGAGGTCGAGCCATC 8848 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || || | ||| |||||||| |||||||| || || || |||||||| Sbjct 8847 AGACACCATCGAAAATGTAAAAGCGAAAATTCAGGACAAGGAAGGCATACCTCCCGATCA 8788 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || ||| | || || || || || ||||| || ||| || ||| | ||||| ||||| Sbjct 8787 GCAGCGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACCCTATCCGACTACAA 8728 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTTT 22449 ||| || || ||||||||| | || || || | ||||| | |||||| || Sbjct 8727 CATCCAGAAGGAATCCACCCTTCACTTGGTGCTCAGATTGAGAGGAGGTATT 8676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419686114818220