Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq6955 187 5e-42 seq7010 156 8e-33 seq5761 152 9e-32 seq6233 145 1e-29 seq1586 145 1e-29 seq6985 98.7 2e-15 >seq6955 Length=469295 Score = 187 bits (206), Expect = 5e-42 Identities = 169/213 (79%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308 ||| ||||| || || ||||| |||||||||||||||||||| || || || | ||||| Sbjct 94624 CAACACCAAATGCAGAGTGGATTCTTTTTGGATGTTATAATCTGATAGGGTGCGGCCATC 94565 Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368 ||| ||||| || || ||||| || | || ||||||||| || ||||| ||||||||||| Sbjct 94564 TTCCAACTGTTTGCCAGCGAAAATCAATCGTTGTTGGTCTGGGGGAATTCCTTCCTTGTC 94505 Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428 ||||||||| || || ||| ||| || ||||||| || ||| || || | ||||| || Sbjct 94504 TTGAATCTTGGCTTTAACGTTCTCAATAGTGTCTGATGGTTCAACCTCAAGTGTGATAGT 94445 Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| || || | ||||| ||||| |||||||| Sbjct 94444 TTTGCCAGTCAAAGTCTTCACGAAAATCTGCAT 94412 Score = 185 bits (204), Expect = 2e-41 Identities = 167/210 (80%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || ||||| || ||||||||||| || ||||| ||||| | ||||| || Sbjct 95532 ACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGTGTGCGGCCATCCTCC 95473 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 |||||||| || || || ||||| | || ||||| || || ||||||||||||||||| Sbjct 95472 AACTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGG 95413 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| || || ||| |||||||| |||| | ||| |||||||| |||||||||||| Sbjct 95412 ATCTTAGCTTTAACGTTTTCGATGGTATCTGAGGCTTCCACTTCCAAAGTGATGGTTTTT 95353 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || || ||||| || || || || |||||| Sbjct 95352 CCAGTCAGGGTTTTAACAAAGATTTGCATT 95323 Score = 179 bits (198), Expect = 7e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | || ||||| |||||||| || || |||||||| |||||||| || ||||| Sbjct 94410 CCTCCTCTCAGCCGCAAAACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCGGAA 94351 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| || ||||| || ||||| ||||| | || ||||| || || Sbjct 94350 AGAGTGCGTCCATCTTCCAATTGCTTTCCAGCGAAAATGAGACGCTGCTGGTCTGGGGGG 94291 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| ||||| || || || ||||| || |||||| ||||||| | ||| ||| Sbjct 94290 ATTCCTTCTTTGTCCTGGATTTTAGCCTTAACATTCTCGATTGTGTCTGAAGGTTCCACT 94231 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| |||||||||||||| || | || || ||||| |||||||| Sbjct 94230 TCCAAAGTGATGGTTTTTCCAGTTAATGTTTTCACGAAGATCTGCAT 94184 Score = 163 bits (180), Expect = 5e-35 Identities = 155/198 (78%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 68265 GTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCG 68324 ||||| |||||||||||||||||||| || || || | |||||||| || || || || Sbjct 95976 GTGGATTCTTTTTGGATGTTATAATCTGATAGGGTGCGGCCATCTTCCAATTGTTTGCCT 95917 Query 68325 GCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTG 68384 ||||| || ||||| |||||||| || ||||| ||||||||||| || ||||||||||| Sbjct 95916 GCGAAAATCAGTCTCTGTTGGTCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTGCCTTA 95857 Query 68385 ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTC 68444 || |||||||| || | || ||| ||||| | || || ||||| || || || || Sbjct 95856 ACATTTTCGATGGTATCAGATGGTTCGACTTCAAGTGTAATAGTTTTGCCAGTCAGAGTT 95797 Query 68445 TTGACGAATATCTGCATT 68462 || || || ||||||||| Sbjct 95796 TTAACAAAAATCTGCATT 95779 Score = 158 bits (174), Expect = 2e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||| | || | ||| ||||| |||| ||||| ||||| |||||||| || || | Sbjct 94868 TTCCTCCTCTCAGTCTCAAAACCAAATGTAAAGTGGATTCTTTCTGGATGTTGTAGTCAG 94809 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | | ||| | |||||||||||||| || ||||| || || | || |||||||| || | Sbjct 94808 ACAATGTACGTCCATCTTCTAACTGTTTGCCGGCAAAAATTAACCTCTGTTGGTCTGGAG 94749 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 |||| ||||||||||| |||||||| || || || || ||||| || | || ||| | Sbjct 94748 GAATTCCTTCCTTGTCCTGAATCTTGGCTTTAACATTTTCAATGGTATCAGATGGTTCGA 94689 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||| | || || ||||| || || ||||| || || || || |||||| Sbjct 94688 CTTCAAGTGTAATTGTTTTGCCAGTAAGGGTTTTTACAAAAATTTGCATT 94639 Score = 158 bits (174), Expect = 2e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||| | | | ||| ||||| || | |||||||| ||||| ||||| || || | Sbjct 95096 TTCCTCCCCTCAATCTCAACACCAAATGCAAAGTGGACTCCTTTTGAATGTTGTAGTCAG 95037 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | | || | ||||| || |||||||| || || || || | ||| || ||||| || | Sbjct 95036 ATAAAGTGCGTCCATCCTCCAACTGCTTTCCTGCAAAGATCAATCTCTGCTGGTCTGGGG 94977 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 ||||||||||||||||||| ||||| ||||| ||| ||| || ||||||| | ||| | Sbjct 94976 GAATGCCTTCCTTGTCTTGGATCTTCGCCTTAACGTTCTCAATTGTGTCTGAGGGTTCCA 94917 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||||||| || || ||||| || || | || || ||||| || |||||| Sbjct 94916 CTTCCAAAGTAATCGTTTTGCCGGTTAAAGTTTTCACGAAGATTTGCATT 94867 Score = 158 bits (174), Expect = 2e-33 Identities = 161/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || ||||| || || || ||||| ||||| || | || | || ||||| Sbjct 95760 ACCAAGTGAAGAGTGGATTCCTTCTGTATGTTGTAATCCGATAAAGTGCGGCCGTCTTCC 95701 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 || || || || ||||| || | || || ||||| || ||||||||||| ||||| || Sbjct 95700 AATTGTTTGCCTGCGAAAATCAACCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCCTGG 95641 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| || || || |||||||||||||| | ||| |||||||| ||||| |||||| Sbjct 95640 ATCTTAGCTTTAACATTCTCGATGGTGTCTGAGGGTTCCACTTCCAAAGTGATAGTTTTT 95581 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || || ||||| || ||||| || |||||| Sbjct 95580 CCAGTCAGGGTTTTCACGAAAATTTGCATT 95551 Score = 131 bits (144), Expect = 3e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || ||||| || || |||||||| ||||| || | || | || ||||| Sbjct 95304 ACCAAGTGAAGAGTGGATTCCTTCTGGATGTTGTAATCAGACAAAGTTCGGCCGTCTTCC 95245 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 || || || || ||||| || ||||| |||||||| || ||||| ||||| ||||| || Sbjct 95244 AATTGTTTTCCTGCGAAAATCAGTCTCTGTTGGTCTGGGGGAATTCCTTCTTTGTCCTGG 95185 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| || || || || || || || | | || ||||| | || ||||||||| Sbjct 95184 ATCTTGGCTTTAACATTTTCAATAGTATCAGAAGGCTCGACTTCAAGTGTAATGGTTTTT 95125 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || || || || ||||| || || |||||| Sbjct 95124 CCAGTAAGAGTTTTGACAAAAATTTGCATT 95095 >seq7010 Length=35453 Score = 156 bits (172), Expect = 8e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || ||||| || || |||||||| || ||||| || || | |||||||| Sbjct 8698 ACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGATAGGGTACGTCCATCTTCC 8757 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 |||||||| || ||||| || | | || || ||||| || |||||||||||||| ||| Sbjct 8758 AACTGCTTACCAGCGAAGATCAAACGCTGCTGATCGGGAGGTATGCCTTCCTTGTCCTGA 8817 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 || || || || || ||||||||||||| || || || || | ||||||||| || Sbjct 8818 ATTTTCGCTTTTACATTTTCGATGGTGTCTGATGGCTCGACCTCAAGGGTGATGGTCTTA 8877 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||| || || ||||| || ||||| Sbjct 8878 CCAGTGAGAGTTTTCACGAAAATTTGCAT 8906 >seq5761 Length=8615 Score = 152 bits (168), Expect = 9e-32 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 ||||| || || ||||| || || |||||||| || ||||| || || | |||||||| Sbjct 307 ACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGATAGGGTACGTCCATCTTCC 248 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 |||||||| || ||||| || | | || || ||||| || |||||||||||||| ||| Sbjct 247 AACTGCTTACCAGCGAAGATCAAACGCTGCTGATCGGGAGGTATGCCTTCCTTGTCCTGA 188 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 || || || || || ||||||||||||| || || || || | ||||||||| || Sbjct 187 ATTTTCGCTTTTACATTTTCGATGGTGTCTGATGGCTCGACCTCAAGGGTGATGGTCTTA 128 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||| || || ||||| || ||||| Sbjct 127 CCAGTGAGAGTTTTCACGAAAATTTGCAT 99 >seq6233 Length=1575 Score = 145 bits (160), Expect = 1e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308 ||| ||||| || | |||||||| || ||||||||||| || || | || | ||||| Sbjct 626 CAACACCAAATGCAAAGTGGACTCCTTCTGGATGTTATAGTCCGACAAAGTGCGTCCATC 567 Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368 ||| | |||||| |||||||| || || | || |||||||| || ||||| || ||||| Sbjct 566 TTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCGGGAGGGATGCCCTCTTTGTC 507 Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428 || || || || || || |||||||| |||| || || || || | |||||||| Sbjct 506 CTGGATTTTGGCTTTAACATTTTCGATGGTATCTGATGGCTCGACCTCAAGAGTGATGGT 447 Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||| || ||||| ||||| |||||||| Sbjct 446 CTTCCCCGTCAGAGTCTTCACGAAGATCTGCAT 414 >seq1586 Length=2413 Score = 145 bits (160), Expect = 1e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308 ||| ||||| || | |||||||| || ||||||||||| || || | || | ||||| Sbjct 2064 CAACACCAAATGCAAAGTGGACTCCTTCTGGATGTTATAGTCCGACAAAGTGCGTCCATC 2005 Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368 ||| | |||||| |||||||| || || | || |||||||| || ||||| || ||||| Sbjct 2004 TTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCGGGAGGGATGCCCTCTTTGTC 1945 Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428 || || || || || || |||||||| |||| || || || || | |||||||| Sbjct 1944 CTGGATTTTGGCTTTAACATTTTCGATGGTATCTGATGGCTCGACCTCAAGAGTGATGGT 1885 Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||| || ||||| ||||| |||||||| Sbjct 1884 CTTCCCCGTCAGAGTCTTCACGAAGATCTGCAT 1852 >seq6985 Length=1024054 Score = 98.7 bits (108), Expect = 2e-15 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 268372 TTTTCGGGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGATGCCGTT 268431 ||||| ||| |||||||| ||||| | ||||||| ||||||||||| ||||| ||||| Sbjct 355776 TTTTCTGGTAACGAACGTTTCGCCCCTGCGAGGGCTTTCGTGGTTGAATAGGATTCCGTT 355717 Query 268432 GCACGCGAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAAACATCTT 268491 ||| || ||||| || || ||||||||||| | || |||| |||||| ||| || Sbjct 355716 GCAGGCAAACATATTGTAGGCGTCACGGTAGTTTATCACTATCCAATATGCATACAGTTT 355657 Query 268492 TGCA 268495 ||| Sbjct 355656 GGCA 355653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921528071947360