Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_008953.1 Length=3935 Score E Sequences producing significant alignments: (Bits) Value seq7280 129 1e-26 seq7462 123 6e-25 seq7337 78.8 2e-11 >seq7280 Length=392443 Score = 129 bits (142), Expect = 1e-26 Identities = 354/536 (66%), Gaps = 10/536 (2%) Strand=Plus/Minus Query 2949 GCAACGA-GAAATCAAGTATTATGGCTATTACCAATGGGTTTTCATCGTATTGTTCATCC 3007 |||| || ||| ||||||| | || ||||||||||| | | | || ||||| ||| Sbjct 355603 GCAAAGACGAAGTCAAGTACCACAAGTACTACCAATGGGTGTGCTTTGTGCTGTTCTTCC 355544 Query 3008 AAGCGGTGTTCTTCTCCATTCCGCAGTACATCTGGAAGGTATGTGAAGGAGGGAAAATGA 3067 | ||| | || |||| | | |||| ||| | |||||| || || || || |||| Sbjct 355543 AGGCGATCTTGTTCTACGTGCCGCGCTACCTGTGGAAGACCTGGGAGGGTGGCCGCATGA 355484 Query 3068 AGACATTGGCTCAT-GATCTGACTTCACCGTTCCTGAGCAAAGAGTGCATCACAGAGAAG 3126 ||| ||| || | ||||||| | ||| || ||||| | || |||| | || | Sbjct 355483 AGAATCTGG-TCGTCGATCTGAACTGCCCGATCGTGAGCGACGACTGCAAGAGCGACAGC 355425 Query 3127 GTGGATCATTTGATGGATTATTTTTTCATGCAGCTGCACGCGCAAAACTCTTACGCCTAC 3186 ||| |||| || || |||| | | |||||| ||| |||| |||||||| Sbjct 355424 AAAAATCTGCTGATTGACTACTTTTGCGCCAACCTGCACATGCAGAACTTCTACGCCTAT 355365 Query 3187 AAATACTTTGGCTGCGAGCTGCTAAACTTTGTCAACGTTGTCGCACAGATATGCTTCATG 3246 | ||| ||||||| |||| || || ||||||| |||| |||||| ||||||| Sbjct 355364 CGGTTCTTCATCTGCGAGGTGCTGAATTTGTTCAACGTAGTCGGACAGATCGCCTTCATG 355305 Query 3247 AATGCCTTTATAGGCGAAGACTTTTTGTTGTACGGAATCTATGTTACCTTCTTCAACCAG 3306 || || | | || || || ||||| | | || ||||| | | Sbjct 355304 GATTTTTTCCTGGACGGCGAGTTCAGCACCTACGGGAGAAACGTGCTGCGCTTCACCGAA 355245 Query 3307 --GAAGCCGCCCATCCGAACATGACGAACCCCATGAAGCGAGTCTTTCCAACAATCACTC 3364 | ||||| || | || || ||| ||| ||| |||||||| | | | || Sbjct 355244 ATGGAGCCGGAG----GAGCGCGAGGA-CCCAATGGCGCGCGTCTTTCCCAAAGTGACCA 355190 Query 3365 GATGTACTTTTCACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCA 3424 || ||||| ||||| ||||||||||||||| | || | || ||| || || ||| Sbjct 355189 AGTGCACTTTCCACAAGTACGGTCCTTCGGGCAGCGTGCAGCGCTTCGACGGCCTGTGCG 355130 Query 3425 TCCTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTC 3480 |||| || | ||| | ||||||||||| |||||| | |||||||||||||||||| Sbjct 355129 TCCTTCCAGTCAACATTGTCAACGAGAAAATCTACGTCTTCCTCTGGTTCTGGTTC 355074 >seq7462 Length=415300 Score = 123 bits (136), Expect = 6e-25 Identities = 353/536 (66%), Gaps = 10/536 (2%) Strand=Plus/Minus Query 2949 GCAACGA-GAAATCAAGTATTATGGCTATTACCAATGGGTTTTCATCGTATTGTTCATCC 3007 |||| || ||| ||||||| | || ||||||||||| | | | || ||||| ||| Sbjct 168001 GCAAAGACGAAGTCAAGTACCACAAGTACTACCAATGGGTGTGCTTTGTGCTGTTCTTCC 167942 Query 3008 AAGCGGTGTTCTTCTCCATTCCGCAGTACATCTGGAAGGTATGTGAAGGAGGGAAAATGA 3067 | ||| || | |||| | |||| || | |||||| || || || || || | Sbjct 167941 AGGCGATGCTGTTCTATGTGCCGCGCTATCTGTGGAAGACCTGGGAGGGTGGCCGCATCA 167882 Query 3068 AGACATTGGCTCAT-GATCTGACTTCACCGTTCCTGAGCAAAGAGTGCATCACAGAGAAG 3126 ||| ||| || | ||||||| | ||| || ||||| | || |||| | || Sbjct 167881 AGAATCTGG-TCGTCGATCTGAACTGCCCGATCGTGAGCGACGACTGCAAGAACGACCGC 167823 Query 3127 GTGGATCATTTGATGGATTATTTTTTCATGCAGCTGCACGCGCAAAACTCTTACGCCTAC 3186 | | |||| || || |||| | | |||||| ||| |||| |||||||| Sbjct 167822 AAAAAGCTGCTGATTGACTACTTTTACGCCAACCTGCACATGCAGAACTTCTACGCCTAT 167763 Query 3187 AAATACTTTGGCTGCGAGCTGCTAAACTTTGTCAACGTTGTCGCACAGATATGCTTCATG 3246 || ||| ||||||| || | || || |||||||| |||| |||||| | ||||||| Sbjct 167762 CGATTCTTCATCTGCGAGGTGATCAATTTCGTCAACGTAGTCGGACAGATCTTCTTCATG 167703 Query 3247 AATGCCTTTATAGGCGAAGACTTTTTGTTGTACGGAATCTATGTTACCTTCTTCAACCAG 3306 || || | | || || || ||||| | | | || ||||| | || Sbjct 167702 GATTTATTCCTGGACGGCGAGTTCAGCACCTACGGGAGCGACGTGCTGCGCTTCACCGAG 167643 Query 3307 --GAAGCCGCCCATCCGAACATGACGAACCCCATGAAGCGAGTCTTTCCAACAATCACTC 3364 | ||||| || | || || ||| ||| ||| |||||||| | | | || Sbjct 167642 ATGGAGCCGGAG----GAGCGCGAGGA-CCCGATGGCGCGCGTCTTTCCCAAAGTGACCA 167588 Query 3365 GATGTACTTTTCACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCA 3424 || ||||| ||||| ||||||||||||||| | || | || ||| || || ||| Sbjct 167587 AGTGCACTTTCCACAAGTACGGTCCTTCGGGCAGCGTGCAGCGCTTCGACGGCCTGTGCG 167528 Query 3425 TCCTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTC 3480 |||| || | ||| | ||||||||||| |||||| | |||||||||||||||||| Sbjct 167527 TCCTTCCAGTCAACATTGTCAACGAGAAAATCTACGTCTTCCTCTGGTTCTGGTTC 167472 >seq7337 Length=293284 Score = 78.8 bits (86), Expect = 2e-11 Identities = 64/78 (82%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 3403 GAAAACTACGAGGGACTCTGCATCCTCCCGGAGAACGTGGTCAACGAGAAGATCTACATT 3462 ||||| |||| | |||||||| || ||| |||||| |||||||| || |||||| | Sbjct 136750 GAAAAGCACGACGCTCTCTGCATTCTACCGCTGAACGTTGTCAACGAAAAAATCTACGTC 136809 Query 3463 TTCCTCTGGTTCTGGTTC 3480 |||||||||||||||||| Sbjct 136810 TTCCTCTGGTTCTGGTTC 136827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12478882338000