Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq6955 136 3e-27 >seq6955 Length=469295 Score = 136 bits (150), Expect = 3e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 114165 AGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGA 114224 ||||||||||| ||||||| || |||||||| || |||||||| || || ||||| Sbjct 94857 AGTCTCAAAACCAAATGTAAAGTGGATTCTTTCTGGATGTTGTAGTCAGACAATGTACGT 94798 Query 114225 GAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCT 114284 |||||| | ||||| || || | || | | ||||||||| |||||||| ||||| Sbjct 94797 CCATCTTCTAACTGTTTGCCGGCAAAAATTAACCTCTGTTGGTCTGGAGGAATTCCTTCC 94738 Query 114285 TTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTC 114344 ||||| |||||| ||| | | ||||| ||| || | | |||||| || | || Sbjct 94737 TTGTCCTGAATCTTGGCTTTAACATTTTCAATGGTATCAGATGGTTCGACTTCAAGTGTA 94678 Query 114345 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | |||||||| || || |||||||||||||| ||||| Sbjct 94677 ATTGTTTTGCCAGTAAGGGTTTTTACAAAAATTTGCAT 94640 Score = 123 bits (136), Expect = 2e-23 Identities = 148/199 (74%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAG--TACGAGAATCTTCAAGTTGTTTAC 114243 || ||||||||||| ||||| ||||| | |||| | || |||||| | |||||| | Sbjct 95976 GTGGATTCTTTTTGGATGTTATAATC--TGATAGGGTGCGGCCATCTTCCAATTGTTTGC 95919 Query 114244 CAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTT 114303 | ||| | || || | ||||||||| |||||||| ||||| ||||| |||||| | Sbjct 95918 CTGCGAAAATCAGTCTCTGTTGGTCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTGCCT 95859 Query 114304 TTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAG 114363 | | | ||| | ||| || | | |||||| || | || | |||||||| ||||||| Sbjct 95858 TAACATTTTCGATGGTATCAGATGGTTCGACTTCAAGTGTAATAGTTTTGCCAGTCAGAG 95799 Query 114364 TTTTTACAAAAATCTGCAT 114382 |||| |||||||||||||| Sbjct 95798 TTTTAACAAAAATCTGCAT 95780 Score = 113 bits (124), Expect = 4e-20 Identities = 157/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 114167 TCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAG--TACGA 114224 |||||| || ||||| | || ||||||||||| ||||| ||||| | |||| | || Sbjct 94627 TCTCAACACCAAATGCAGAGTGGATTCTTTTTGGATGTTATAATC--TGATAGGGTGCGG 94570 Query 114225 GAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCT 114284 |||||| | ||||| |||||| | || | || |||||||| || ||||| ||||| Sbjct 94569 CCATCTTCCAACTGTTTGCCAGCGAAAATCAATCGTTGTTGGTCTGGGGGAATTCCTTCC 94510 Query 114285 TTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTC 114344 ||||| |||||| ||| | | |||| ||||| | | ||| || || | || Sbjct 94509 TTGTCTTGAATCTTGGCTTTAACGTTCTCAATAGTGTCTGATGGTTCAACCTCAAGTGTG 94450 Query 114345 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | |||||||| |||| ||| || || ||||||||||| Sbjct 94449 ATAGTTTTGCCAGTCAAAGTCTTCACGAAAATCTGCAT 94412 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || ||||||||||| || ||| || ||||| | |||||| || Sbjct 95292 GTGGATTCCTTCTGGATGTTGTAATCAGACAAAGTTCGGCCGTCTTCCAATTGTTTTCCT 95233 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| | || || | ||||||||| || ||||| ||||||||||| ||||| ||| Sbjct 95232 GCGAAAATCAGTCTCTGTTGGTCTGGGGGAATTCCTTCTTTGTCCTGGATCTTGGCTTTA 95173 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||||| || || | | ||||| || | || | ||||| || || |||||| Sbjct 95172 ACATTTTCAATAGTATCAGAAGGCTCGACTTCAAGTGTAATGGTTTTTCCAGTAAGAGTT 95113 Query 114366 TTTACAAAAATCTGCAT 114382 || |||||||| ||||| Sbjct 95112 TTGACAAAAATTTGCAT 95096 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| ||||| |||||||| ||| | || || ||| || | || || ||| Sbjct 95520 GTGGATTCCTTTTGGATGTTGTAGTCGGAAAGTGTGCGGCCATCCTCCAACTGCTTTCCA 95461 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||||||||| ||||| || || |||||||| ||||| ||||| ||| Sbjct 95460 GCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATCTTAGCTTTA 95401 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||| | ||| || | || ||| || |||| || | ||||| || ||||| ||| Sbjct 95400 ACGTTTTCGATGGTATCTGAGGCTTCCACTTCCAAAGTGATGGTTTTTCCAGTCAGGGTT 95341 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| || ||||| Sbjct 95340 TTAACAAAGATTTGCAT 95324 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || ||||||||||| | ||| || ||||| | |||||| || Sbjct 95748 GTGGATTCCTTCTGTATGTTGTAATCCGATAAAGTGCGGCCGTCTTCCAATTGTTTGCCT 95689 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| | || | | ||| ||||| |||||||||||||||||||| ||||| ||| Sbjct 95688 GCGAAAATCAACCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCCTGGATCTTAGCTTTA 95629 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| | || ||| || |||| || | ||||| || ||||| ||| Sbjct 95628 ACATTCTCGATGGTGTCTGAGGGTTCCACTTCCAAAGTGATAGTTTTTCCAGTCAGGGTT 95569 Query 114366 TTTACAAAAATCTGCAT 114382 || || ||||| ||||| Sbjct 95568 TTCACGAAAATTTGCAT 95552 Score = 100 bits (110), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 114170 CAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATC 114229 |||||| || || | ||||| ||||| || |||||||| ||| | ||| || ||| Sbjct 94396 CAAAACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCGGAAAGAGTGCGTCCATC 94337 Query 114230 TTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289 ||| | ||| || |||||| | ||||||||||| ||||| || || || ||||||||||| Sbjct 94336 TTCCAATTGCTTTCCAGCGAAAATGAGACGCTGCTGGTCTGGGGGGATTCCTTCTTTGTC 94277 Query 114290 GGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCG 114348 || ||| | ||| | | || | ||||| | | ||| || |||| || | | Sbjct 94276 CTGGAT-TTTAGCCTTAACATTCTCGATTGTGTCTGAAGGTTCCACTTCCAAAGTGATGG 94218 Query 114349 TTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||| || || | ||||| || || |||||||| Sbjct 94217 TTTTTCCAGTTAATGTTTTCACGAAGATCTGCAT 94184 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 114167 TCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGA 114226 |||||| || ||||| | || || || |||||||||||||| || | ||| || Sbjct 95083 TCTCAACACCAAATGCAAAGTGGACTCCTTTTGAATGTTGTAGTCAGATAAAGTGCGTCC 95024 Query 114227 ATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTT 114286 ||| || | || || || || |||| | | ||| ||||| || ||||||||||| || Sbjct 95023 ATCCTCCAACTGCTTTCCTGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCTTCCTT 94964 Query 114287 GTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCAC 114346 ||| ||||| || | | |||| ||||| | || ||| || |||| || | Sbjct 94963 GTCTTGGATCTTCGCCTTAACGTTCTCAATTGTGTCTGAGGGTTCCACTTCCAAAGTAAT 94904 Query 114347 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||||||||||| | |||||| || || || ||||| Sbjct 94903 CGTTTTGCCGGTTAAAGTTTTCACGAAGATTTGCAT 94868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420092474263056