Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq7343 187 5e-42 seq7149 113 9e-20 >seq7343 Length=933009 Score = 187 bits (206), Expect = 5e-42 Identities = 482/726 (66%), Gaps = 9/726 (1%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 |||||||| ||||| || ||||| ||||| || || || || || | | |||| Sbjct 374554 CTGGCCTTTTTCGCAGCATCTGATGGCATTGTGAACGAAAATCTTGTGGAACGATTCAGC 374613 Query 42483 AAAGAGGTGCA-GTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAA 42541 | || ||||| ||| ||||| | || ||||| || || || |||||||| || || Sbjct 374614 CAGGAAGTGCAAGTAACC-GAGGCTAGATGTTTCTATGGGTTTCAAATAGCCATCGAAAA 374672 Query 42542 CGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCG 42601 | |||||||| ||||| || ||| | | || |||||| ||||| || || Sbjct 374673 TATTCACTCTGAAATGTACAGCATGCTGATTGAGACCTACATCAGCGATCCTGTTCAGAA 374732 Query 42602 TAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGC 42661 | |||| || || || || || | ||||| | | || ||| ||||||||||| Sbjct 374733 AAGTTTCTTGTTTAACGCAATTGAAACACTTCCCTGTGTAAGGAGGAAAGCGGACTGGGC 374792 Query 42662 GCTCAACTGGATCGAGAGTCCCGACG-CAACGTTCGGCGAGAGGCTGGTAGCCTTTACCG 42720 ||| || |||||| || | |||| | || || || ||||| | || || || | | Sbjct 374793 GCTTAAGTGGATC-AGCTCCAAGACGTCCACATTTGGAGAGAGAATCGTCGCTTTCGCAG 374851 Query 42721 CCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGG 42780 | ||||| || || || ||||| ||| ||| || || ||||||||||| ||| | | Sbjct 374852 CTGTCGAAGGAATATTTTTCTCTGGCAGCTTTGCTTCGATCTTCTGGCTTAAGAAACGCG 374911 Query 42781 TGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATA 42840 | ||||||||| || || || || || ||||| ||| ||| ||||| || ||||| Sbjct 374912 GCTTGATGCCCGGCCTGACATTTTCAAATGAACTGATCTCCAGAGACGAAGGATTGCATT 374971 Query 42841 GGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGG 42900 | ||||||||||| | || ||||| | | ||| || || ||||| || || | | Sbjct 374972 GTGACTTTGCCTGTTTACTATTCTC---CTATCTCGTTCAAAAACCCTCCAAAGAAAGAG 375028 Query 42901 TCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGC 42960 | || ||| || || || || | ||||| ||||||| || || | | |||| Sbjct 375029 TGACGGGCATTATTCGAGATGCAGTTGTTATCGAACAGGAGTTTCTGTCGGATGCACTGC 375088 Query 42961 CCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCG 43020 | || || |||| |||||| | | ||||||||| ||||||| | | || || | Sbjct 375089 CTGTTAGTCTTATCGGGATGAACTGCAAGCTCATGTGCCAGTACATAGAATTTGTGGCTG 375148 Query 43021 ACCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGAC 43079 ||| || || || | || | | | | | || || | || ||||| Sbjct 375149 ACCGACTGCTAATGGAACTCGGTTGTGAAAAG-GTTTATAATGTCACTAATCCGTTCGAT 375207 Query 43080 TTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGAC 43139 |||||| || || || ||||||||||||||||||||||| ||| |||| ||| Sbjct 375208 TTTATGTCGATAATATCTACAGAGGGCAAGACCAACTTTTTCGAAAAGAAGGTCGGCGAA 375267 Query 43140 TACCAG 43145 |||||| Sbjct 375268 TACCAG 375273 >seq7149 Length=218332 Score = 113 bits (124), Expect = 9e-20 Identities = 256/381 (67%), Gaps = 18/381 (5%) Strand=Plus/Minus Query 244456 GAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGG 244515 |||||| || | ||||| |||||| |||||||||| || || | || || || || || Sbjct 123278 GAAGGGCATTCGCATCAAAATGAAGGCGTCGGCCAGGCCTTGGATTCCAATCCCTATAGG 123219 Query 244516 TCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCAC 244575 ||||| ||| |||| ||| | | || ||| || ||||||||||| |||| || | Sbjct 123218 CCTGTGCCGCATGTTCGAGTTCTTTGCCTCGATTACCGGGTAAAAGTTCACGTCAATAAT 123159 Query 244576 CTTGTTGAGGTTGCGGGTGATCA--TGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTA- 244632 ||||| | || || |||| | | || || | | | | || ||||| | Sbjct 123158 CTTGTCCAAATTCCGCGTGACTACTTTCGT--GATGGCCTTTAACTTCTCGAAGTCAAAA 123101 Query 244633 CTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAG 244692 ||| | | || ||| ||| |||||| ||| | || || |||||| Sbjct 123100 CTCTTCCGA----TCAGCG-----GAT----ACAAACATGTTAACCGCCACTGAGGCCAG 123054 Query 244693 GTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACT 244752 ||||| ||||| | || || | ||||| | || || || ||||| || || || Sbjct 123053 ATTGCAAACGGCGATTTCATCGGCTGAAGTGTATTCAACGATTTCCGTGCAAAGATTGCT 122994 Query 244753 GCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAG 244812 || ||| || |||||||||| || || ||||| ||| |||||||||||| ||||| || Sbjct 122993 GCTCTTTATCGTGCCCAGGTTCTTCTGGTTGGATTTGCGGTTGCAGGCGTCTTTGTACAG 122934 Query 244813 CATGAAGGGCCCCCCGGTCTC 244833 |||| ||||| |||||| || Sbjct 122933 CATGTAGGGCGTCCCGGTTTC 122913 Score = 93.3 bits (102), Expect = 8e-14 Identities = 233/349 (67%), Gaps = 4/349 (1%) Strand=Plus/Minus Query 243887 TGGCTCTGGTCGACGAAGGGCGCC-CGCTCTGCGGCCATGGTGATGAGGTCCTTCTGAGA 243945 ||||| ||||||| || | |||| || || |||||||| || || | | || || || Sbjct 123891 TGGCTTTGGTCGATAAATG-CGCCGCGATCCGCGGCCATATCGAGGATGACTTTTTGCGA 123833 Query 243946 TATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCCTTCGATGTTCTG 244005 || || || ||||||||||||| | ||| | || || |||| | |||||| || Sbjct 123832 AATTTCCCACACCGTCTTGTAGATTGCCTTCAAGTCATCAGGGATGTCGGGGATGTTTTG 123773 Query 244006 CACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCC-CAAGC 244064 | |||||| | | | | |||| ||| | ||| | |||| |||||| || | | Sbjct 123772 TATCGAGCCGTGATTGGCTATGACTTGGTTCTTCATCGTGTCGTCCCACAGTCCTCTTTC 123713 Query 244065 GCTCCAGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGC 244124 | || || ||| || || ||| || ||||| |||||||| || ||||| || | | Sbjct 123712 GGTCAAG-TCCTTGAGAAGATGCTGATTGACCACTTGAAACTCCCCGGACAGGACTCTCC 123654 Query 244125 GCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCG 244184 | ||| | ||| || || |||||||| ||| || | || ||||| || || || | Sbjct 123653 GAGTGTAAATGTTACTAGTGTACGGCTCGACGCTTTCGTTATTTCCCAGGATTTGGGCGG 123594 Query 244185 TGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTG 244233 | || || ||||| || | || |||| ||| || ||||| || Sbjct 123593 TTGAAGCCGTGGGCATTGGGGCCAGAAGCAACGAGTTTCTTACGCCATG 123545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944242546882880