Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq4314 120 3e-22 seq5491 102 7e-17 seq4315 102 7e-17 >seq4314 Length=7604 Score = 120 bits (132), Expect = 3e-22 Identities = 161/219 (74%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 20248 ATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACC 20307 ||| || | ||| ||||| | |||| |||||||||||||||||||| || |||| || Sbjct 1797 ATGGGCGATCATGTAAGTGAGCAGGGCGTAGCTGGCAATGTTAAAAGGTACCCCCAGCCC 1856 Query 20308 CATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTG 20367 ||| || | || || ||||||| || || || || || || | ||| || ||||| || Sbjct 1857 CATATCCGCTGATCTTTGATACAATTGGCACGACAGTTCCCCATTAGCAACGTAAAACTG 1916 Query 20368 -ACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCAC 20426 ||| |||| |||||||| || | ||||| | | ||| |||||||||| || | Sbjct 1917 CACAAGACAA-TGACAGGGGGGCAAAGCCATTTCAGGAATGTCTACCGGGTTCCAAGCGC 1975 Query 20427 ACATAATGATTCTTCTATC-GTGCGGATTATTTTTTATT 20464 ||||||| || |||||||| ||| || || ||| | ||| Sbjct 1976 ACATAATCATCCTTCTATCTGTG-GGTTTGTTTCTGATT 2013 >seq5491 Length=7586 Score = 102 bits (112), Expect = 7e-17 Identities = 158/219 (72%), Gaps = 5/219 (2%) Strand=Plus/Minus Query 20248 ATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACC 20307 ||| || | ||| ||||| | |||| |||||||||||||||||||| || |||| || Sbjct 5790 ATGGGCGATCATGTAAGTGAGCAGGGCGTAGCTGGCAATGTTAAAAGGTACCCCCAGCCC 5731 Query 20308 CATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTG 20367 ||| || || || ||||||| || || || || || || | ||| || ||||| || Sbjct 5730 CATATCGGTTGATCTTTGATACAATTGGCACGACAGTTCCCCATTAGCAACGTAAAACTG 5671 Query 20368 -ACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCAC 20426 ||| ||| |||||||| | | ||||| | | || | |||||||||| || | Sbjct 5670 CACAAGGCAA-TGACAGGGGCGCAAAGCCATTTCAGGAATGT-CTCCGGGTTCCAAGCGC 5613 Query 20427 ACATAATGATTCTTCTATC-GTGCGGATTATTTTTTATT 20464 ||||||| || |||||||| ||| || || ||| | ||| Sbjct 5612 ACATAATCATCCTTCTATCTGTG-GGTTTGTTTCTGATT 5575 >seq4315 Length=6298 Score = 102 bits (112), Expect = 7e-17 Identities = 158/219 (72%), Gaps = 5/219 (2%) Strand=Plus/Minus Query 20248 ATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACC 20307 ||| || | ||| ||||| | |||| |||||||||||||||||||| || |||| || Sbjct 2422 ATGGGCGATCATGTAAGTGAGCAGGGCGTAGCTGGCAATGTTAAAAGGTACCCCCAGCCC 2363 Query 20308 CATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTG 20367 ||| || || || ||||||| || || || || || || | ||| || ||||| || Sbjct 2362 CATATCGGTTGATCTTTGATACAATTGGCACGACAGTTCCCCATTAGCAACGTAAAACTG 2303 Query 20368 -ACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCAC 20426 ||| ||| |||||||| | | ||||| | | || | |||||||||| || | Sbjct 2302 CACAAGGCAA-TGACAGGGGCGCAAAGCCATTTCAGGAATGT-CTCCGGGTTCCAAGCGC 2245 Query 20427 ACATAATGATTCTTCTATC-GTGCGGATTATTTTTTATT 20464 ||||||| || |||||||| ||| || || ||| | ||| Sbjct 2244 ACATAATCATCCTTCTATCTGTG-GGTTTGTTTCTGATT 2207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441327625493920