Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq6955 134 3e-26 seq7453 132 1e-25 seq6233 132 1e-25 seq1586 132 1e-25 seq5761 123 6e-23 seq7010 120 7e-22 >seq6955 Length=469295 Score = 134 bits (148), Expect = 3e-26 Identities = 148/196 (76%), Gaps = 6/196 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||||||||| ||||| || | || ||||| || ||||| |||||||| |||||||| Sbjct 95971 TTCTTTTTGGATGTTATAATCTGATAGGGTGCGGCCATCTTCCAATTGTTTGCCTGCGAA 95912 Query 288342 GATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||||| | |||||| ||| || |||||||| || |||||||| || || || || Sbjct 95911 AATCAGTCTCTGTTG---GTCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTGCCTTAAC 95855 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||||| || | ||| | ||| ||||| || || || || || || |||||||| || Sbjct 95854 ATTTTCGATGGTATCAGATGGTTCGACTTCAAGTGTAATAGTTTTGCCAGTCAGAGTTTT 95795 Query 288459 GACGAATATCTGCATT 288474 || || ||||||||| Sbjct 95794 AACAAAAATCTGCATT 95779 Score = 131 bits (144), Expect = 4e-25 Identities = 154/207 (74%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 288271 TGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGT 288330 |||| ||| ||| || ||||| || || || | | || || |||||||| |||||| Sbjct 95298 TGAAGAGTGGATTCCTTCTGGATGTTGTAATCAGACAAAGTTCGGCCGTCTTCCAATTGT 95239 Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATT 288387 ||||||||||| ||||| | |||||| |||||| ||||||||||| |||||||| Sbjct 95238 TTTCCTGCGAAAATCAGTCTCTGTTGG---TCTGGGGGAATTCCTTCTTTGTCCTGGATC 95182 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 || ||||| || ||||| |||| ||| | || ||||| || || || || || || Sbjct 95181 TTGGCTTTAACATTTTCAATAGTATCAGAAGGCTCGACTTCAAGTGTAATGGTTTTTCCA 95122 Query 288448 GTCAGAGTCTTGACGAATATCTGCATT 288474 || ||||| ||||| || || |||||| Sbjct 95121 GTAAGAGTTTTGACAAAAATTTGCATT 95095 Score = 127 bits (140), Expect = 5e-24 Identities = 149/200 (75%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||||| || |||||||| ||||| ||||| ||||| ||||| Sbjct 94374 TCTTTCTGGATGTTGTAGTCGGAAAGAGTGCGTCCATCTTCCAATTGCTTTCCAGCGAAA 94315 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || |||||||| || |||||| ||||||||||| ||||||||||| || || || Sbjct 94314 ATGAGACGCTGCTGG---TCTGGGGGGATTCCTTCTTTGTCCTGGATTTTAGCCTTAACA 94258 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || | ||| ||||| | ||||| || || || || | || || Sbjct 94257 TTCTCGATTGTGTCTGAAGGTTCCACTTCCAAAGTGATGGTTTTTCCAGTTAATGTTTTC 94198 Query 288460 ACGAATATCTGCATTATGTT 288479 ||||| |||||||| |||| Sbjct 94197 ACGAAGATCTGCATCCTGTT 94178 Score = 125 bits (138), Expect = 2e-23 Identities = 167/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| | | ||| | || | ||| | ||| |||||||||||| ||||| || | Sbjct 94639 TCCACCTCTCAATCTCAACACCAAATGCAGAGTGGATTCTTTTTGGATGTTATAATCTGA 94580 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || ||||| || ||||| || ||||| || ||||| |||| || ||||| ||||| Sbjct 94579 TAGGGTGCGGCCATCTTCCAACTGTTTGCCAGCGAAAATCAATCGTTGTTG---GTCTGG 94523 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 | |||||||| || || || || || ||||| ||||| || |||| || | ||| Sbjct 94522 GGGAATTCCTTCCTTGTCTTGAATCTTGGCTTTAACGTTCTCAATAGTGTCTGATGGTTC 94463 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| || || || |||| |||||| ||||| |||||||| Sbjct 94462 AACCTCAAGTGTGATAGTTTTGCCAGTCAAAGTCTTCACGAAAATCTGCAT 94412 >seq7453 Length=213858 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | | |||||||| ||||| | || || || |||||| Sbjct 107700 TCCTTCTGGATGTTGTAGTCCGACAAAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAG 107759 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| ||||| || ||||| || ||||||||||||||||| ||||| || ||| Sbjct 107760 ATCAGCCGCTGCTGGTCGGGAGGGATGCCCTCTTTATCCTGGATTTTGGCTTTAACATTT 107819 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || |||| ||| | || || || || ||||| ||||| || ||||||||||| ||| Sbjct 107820 TCGATAGTATCTGATGGCTCGACCTCAAGAGTGATGGTCTTGCCCGTCAGAGTCTTCACG 107879 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 107880 AAGATCTGCAT 107890 >seq6233 Length=1575 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| |||||||| | | |||||||| ||||| | || || || |||||| Sbjct 604 TCCTTCTGGATGTTATAGTCCGACAAAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAG 545 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| ||||| || ||||| || ||||| ||||||||||| ||||| || ||| Sbjct 544 ATCAGCCGCTGCTGGTCGGGAGGGATGCCCTCTTTGTCCTGGATTTTGGCTTTAACATTT 485 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| | || || || || ||||| |||||||| ||||||||||| ||| Sbjct 484 TCGATGGTATCTGATGGCTCGACCTCAAGAGTGATGGTCTTCCCCGTCAGAGTCTTCACG 425 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 424 AAGATCTGCAT 414 >seq1586 Length=2413 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| |||||||| | | |||||||| ||||| | || || || |||||| Sbjct 2042 TCCTTCTGGATGTTATAGTCCGACAAAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAG 1983 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| ||||| || ||||| || ||||| ||||||||||| ||||| || ||| Sbjct 1982 ATCAGCCGCTGCTGGTCGGGAGGGATGCCCTCTTTGTCCTGGATTTTGGCTTTAACATTT 1923 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| | || || || || ||||| |||||||| ||||||||||| ||| Sbjct 1922 TCGATGGTATCTGATGGCTCGACCTCAAGAGTGATGGTCTTCCCCGTCAGAGTCTTCACG 1863 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 1862 AAGATCTGCAT 1852 >seq5761 Length=8615 Score = 123 bits (136), Expect = 6e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 288258 TCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCC 288317 ||| || || | ||||| ||| ||| || ||||| || ||||||| || || ||||| Sbjct 314 TCTGAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGATAGGGTACGTCC 255 Query 288318 GTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTT 288377 ||||| || || || || |||||||||| |||||| ||| || || ||||| || Sbjct 254 ATCTTCCAACTGCTTACCAGCGAAGATCAAACGCTGCTGATCGGGAGGTATGCCTTCCTT 195 Query 288378 ATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGAT 288437 ||||| ||||||||||| || ||||| || | || | || || || || ||||| Sbjct 194 GTCCTGAATTTTCGCTTTTACATTTTCGATGGTGTCTGATGGCTCGACCTCAAGGGTGAT 135 Query 288438 CGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || || ||||| || ||||| || ||||| Sbjct 134 GGTCTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 99 >seq7010 Length=35453 Score = 120 bits (132), Expect = 7e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 288258 TCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCC 288317 ||| || || | |||| ||| ||| || ||||| || ||||||| || || ||||| Sbjct 8691 TCTGAGCACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGATAGGGTACGTCC 8750 Query 288318 GTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTT 288377 ||||| || || || || |||||||||| |||||| ||| || || ||||| || Sbjct 8751 ATCTTCCAACTGCTTACCAGCGAAGATCAAACGCTGCTGATCGGGAGGTATGCCTTCCTT 8810 Query 288378 ATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGAT 288437 ||||| ||||||||||| || ||||| || | || | || || || || ||||| Sbjct 8811 GTCCTGAATTTTCGCTTTTACATTTTCGATGGTGTCTGATGGCTCGACCTCAAGGGTGAT 8870 Query 288438 CGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || || ||||| || ||||| || ||||| Sbjct 8871 GGTCTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 8906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179530643931464