Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq6955 127 2e-24 seq7453 120 3e-22 seq7149 116 4e-21 seq6233 111 2e-19 seq1586 111 2e-19 seq5761 109 5e-19 seq7010 105 7e-18 >seq6955 Length=469295 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || | ||| || ||||| | |||| || ||||| || || ||||||||||| | Sbjct 95778 CCTCCTCTCAACCTGAGCACCAAGTGAAGAGTGGATTCCTTCTGTATGTTGTAATCCGAT 95719 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| ||||||| | || ||||| || |||| | || ||||||||| |||||| Sbjct 95718 AAAGTGCGGCCGTCTTCCAATTGTTTGCCTGCGAAAATCAACCTCTGCTGGTCTGGAGGA 95659 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTA-CAACCTCCACTGTATCACCGGCGTCCAC 64395 || |||||||| || || || || |||||| || ||| | || || || ||||| Sbjct 95658 ATGCCTTCTTTGTCCTGGATCTTA-GCTTTAACATTCTCGATGGTGTCTGAGGGTTCCAC 95600 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||| | ||| | || || || |||| ||||| ||||||||||||||| Sbjct 95599 TTCCAAAGTGATAGTTTTTCCAGTCAGGGTTTTCACGAAAATTTGCATT 95551 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || | |||||| | ||| | ||| | || || || |||||||||||||| || | Sbjct 95094 CCTCCCCTCAATCTCAACACCAAATGCAAAGTGGACTCCTTTTGAATGTTGTAGTCAGAT 95035 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | || || | |||||| || ||| | || | | ||||||||| || ||| Sbjct 95034 AAAGTGCGTCCATCCTCCAACTGCTTTCCTGCAAAGATCAATCTCTGCTGGTCTGGGGGA 94975 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || ||||| || ||||| || || ||| || ||| | ||| || || |||||| Sbjct 94974 ATGCCTTCCTTGTCTTGGATCTTCGCCTTAACGTTCTCAATTGTGTCTGAGGGTTCCACT 94915 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || | ||| | || |||||||| |||||||| ||||| ||||||||| Sbjct 94914 TCCAAAGTAATCGTTTTGCCGGTTAAAGTTTTCACGAAGATTTGCATT 94867 Score = 118 bits (130), Expect = 1e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||||||||| ||||| ||||||| | |||||| | ||||| | || ||||| Sbjct 95976 GTGGATTCTTTTTGGATGTTATAATCTGATAGGGTGCGGCCATCTTCCAATTGTTTGCCT 95917 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || |||| || | ||| ||||| |||||||||||||| || || || || ||| ||| Sbjct 95916 GCGAAAATCAGTCTCTGTTGGTCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTGCCTTA 95857 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | |||||| | || ||||| | || | || ||||| |||| |||| Sbjct 95856 ACATTTTCGATGGTATCAGATGGTTCGACTTCAAGTGTAATAGTTTTGCCAGTCAGAGTT 95797 Query 64427 TTTACGAAAATTTGCATT 64444 || || ||||| |||||| Sbjct 95796 TTAACAAAAATCTGCATT 95779 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || || ||||| || |||||||| || | | ||||| | ||||| | ||| Sbjct 94386 TGAAGAGTAGACTCTTTCTGGATGTTGTAGTCGGAAAGAGTGCGTCCATCTTCCAATTGC 94327 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || || || ||||||| ||||||||||| || || ||||||||||| || || ||||| Sbjct 94326 TTTCCAGCGAAAATGAGACGCTGCTGGTCTGGGGGGATTCCTTCTTTGTCCTGGATTTTA 94267 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| ||| ||| | ||| || | |||||||| | ||| | ||| || || || Sbjct 94266 GCCTTAACATTCTCGATTGTGTCTGAAGGTTCCACTTCCAAAGTGATGGTTTTTCCAGTT 94207 Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443 || ||||| ||||| || ||||| Sbjct 94206 AATGTTTTCACGAAGATCTGCAT 94184 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 64229 CTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCG 64288 || ||||| | |||| || ||||| ||||| |||||||| || | | ||||| | Sbjct 95538 CTGAGCACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGTGTGCGGCCA 95479 Query 64289 TCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTT 64348 || || | |||||| || ||| | ||||| ||||||||||| || || || ||||| || Sbjct 95478 TCCTCCAACTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCCTTCCTTG 95419 Query 64349 TCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407 ||||| | | || ||||| || || | ||||| ||| |||||||| | ||| | Sbjct 95418 TCTTGGA-TCTTAGCTTTAACGTTTTCGATGGTATCTGAGGCTTCCACTTCCAAAGTGAT 95360 Query 64408 GGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||| || || |||| ||||| || || ||||||||| Sbjct 95359 GGTTTTTCCAGTCAGGGTTTTAACAAAGATTTGCATT 95323 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || | |||||| | ||| | ||| | || ||||||||||| ||||| ||||||| Sbjct 94638 CCACCTCTCAATCTCAACACCAAATGCAGAGTGGATTCTTTTTGGATGTTATAATCTGAT 94579 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| | ||||| | ||| ||||| || |||| | || || ||||| || ||| Sbjct 94578 AGGGTGCGGCCATCTTCCAACTGTTTGCCAGCGAAAATCAATCGTTGTTGGTCTGGGGGA 94519 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCAC 64395 |||||||| || ||||| | | || ||||| || ||| | || || | || || Sbjct 94518 ATTCCTTCCTTGTCTTG-AATCTTGGCTTTAACGTTCTCAATAGTGTCTGATGGTTCAAC 94460 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | || ||||| |||||||| || |||||||| ||||| Sbjct 94459 CTCAAGTGTGATAGTTTTGCCAGTCAAAGTCTTCACGAAAATCTGCAT 94412 Score = 109 bits (120), Expect = 5e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || |||||||| || |||||||| || | | || || | ||||| | ||| |||||| Sbjct 94836 GTGGATTCTTTCTGGATGTTGTAGTCAGACAATGTACGTCCATCTTCTAACTGTTTGCCG 94777 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| |||| | || ||| ||||| |||||||||||||| || || || || || ||||| Sbjct 94776 GCAAAAATTAACCTCTGTTGGTCTGGAGGAATTCCTTCCTTGTCCTGAATCTTG-GCTTT 94718 Query 64367 ACAACCTCCACTG-TATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 | | | || || ||||| | || ||||| | || | || ||||| || | || Sbjct 94717 AACATTTTCAATGGTATCAGATGGTTCGACTTCAAGTGTAATTGTTTTGCCAGTAAGGGT 94658 Query 64426 TTTTACGAAAATTTGCATT 64444 |||||| |||||||||||| Sbjct 94657 TTTTACAAAAATTTGCATT 94639 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || | ||| || ||||| | |||| || ||||| || || ||||||||||| | Sbjct 95322 CCACCTCTCAACCTGAGCACCAAGTGAAGAGTGGATTCCTTCTGGATGTTGTAATCAGAC 95263 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || ||||||| | || || || || |||| || | ||| ||||| || ||| Sbjct 95262 AAAGTTCGGCCGTCTTCCAATTGTTTTCCTGCGAAAATCAGTCTCTGTTGGTCTGGGGGA 95203 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACT-GTATCACCGGCGTCCAC 64395 ||||||||||| || || || || |||||| | | || | |||||| | || || Sbjct 95202 ATTCCTTCTTTGTCCTGGATCTTG-GCTTTAACATTTTCAATAGTATCAGAAGGCTCGAC 95144 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||| | || | ||| || || || | |||||| || |||||||||||| Sbjct 95143 TTCAAGTGTAATGGTTTTTCCAGTAAGAGTTTTGACAAAAATTTGCATT 95095 >seq7453 Length=213858 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || | ||| || | ||| | ||| | || || || || || |||||||| || | Sbjct 107664 CCTCCCCTCAACCTCAACACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCCGAC 107723 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | ||||| |||||||||||||| | || |||||||||||||||||||| Sbjct 107724 AAAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCGGGAGGG 107783 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || ||||| || || | |||| ||||| ||| || | ||||| | || || Sbjct 107784 ATGCCCTCTTTATCCTGGA-TTTTGGCTTTAACATTTTCGATAGTATCTGATGGCTCGAC 107842 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | ||| | ||||||||| |||| ||| || ||||| || ||||| Sbjct 107843 CTCAAGAGTGATGGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 107890 >seq7149 Length=218332 Score = 116 bits (128), Expect = 4e-21 Identities = 121/159 (76%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 154583 CACAGACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTGC 154642 ||| || |||| ||||||||||| ||||| || | | |||||| || ||||| | Sbjct 123065 CACTGAGGCCAGATTGCAAACGGCGATTTCATCGGCTGAAGTGTATTCAACGATTTCCGT 123006 Query 154643 GCACAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGC 154702 ||| | ||| |||| || ||||||||||| ||||| || |||||| |||||| || Sbjct 123005 GCAAAGATTGCTGCTCTTTATCGTGCCCAGGTTCTTCTGGTTGGATTTGCGGTTGCAGGC 122946 Query 154703 GTCTTTGTACAAAATGTACGGGGTGCCCGTTTCCACTTG 154741 ||||||||||| ||||| || || || ||||||||||| Sbjct 122945 GTCTTTGTACAGCATGTAGGGCGTCCCGGTTTCCACTTG 122907 >seq6233 Length=1575 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || | ||| || | ||| | ||| | || || || || || ||||| || || | Sbjct 640 CCTCCCCTCAACCTCAACACCAAATGCAAAGTGGACTCCTTCTGGATGTTATAGTCCGAC 581 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | ||||| |||||||||||||| | || |||||||||||||||||||| Sbjct 580 AAAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCGGGAGGG 521 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || ||||| || || | |||| ||||| ||| || | ||||| | || || Sbjct 520 ATGCCCTCTTTGTCCTGGA-TTTTGGCTTTAACATTTTCGATGGTATCTGATGGCTCGAC 462 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | ||| | |||||| || |||| ||| || ||||| || ||||| Sbjct 461 CTCAAGAGTGATGGTCTTCCCCGTCAGAGTCTTCACGAAGATCTGCAT 414 >seq1586 Length=2413 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || | ||| || | ||| | ||| | || || || || || ||||| || || | Sbjct 2078 CCTCCCCTCAACCTCAACACCAAATGCAAAGTGGACTCCTTCTGGATGTTATAGTCCGAC 2019 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | ||||| |||||||||||||| | || |||||||||||||||||||| Sbjct 2018 AAAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCGGGAGGG 1959 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || ||||| || || | |||| ||||| ||| || | ||||| | || || Sbjct 1958 ATGCCCTCTTTGTCCTGGA-TTTTGGCTTTAACATTTTCGATGGTATCTGATGGCTCGAC 1900 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | ||| | |||||| || |||| ||| || ||||| || ||||| Sbjct 1899 CTCAAGAGTGATGGTCTTCCCCGTCAGAGTCTTCACGAAGATCTGCAT 1852 >seq5761 Length=8615 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || | |||||| ||||| | ||||| || ||||| || || |||||||| || | Sbjct 326 ACCTCCTCTCAATCTGAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGA 267 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| || | ||||| | |||||| || || | || | |||||||| |||||||| Sbjct 266 TAGGGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGCTGCTGATCGGGAGG 207 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || ||||| || || || ||||| |||||| || | || || | || || Sbjct 206 TATGCCTTCCTTGTCCTGAATTTTCGCTTTTACATTTTCGATGGTGTCTGATGGCTCGAC 147 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||| || || | |||||| |||||||||||||| Sbjct 146 CTCAAGGGTGATGGTCTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 99 >seq7010 Length=35453 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || | |||||| ||||| | |||| || ||||| || || |||||||| || | Sbjct 8679 ACCTCCTCTCAATCTGAGCACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGA 8738 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| || | ||||| | |||||| || || | || | |||||||| |||||||| Sbjct 8739 TAGGGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGCTGCTGATCGGGAGG 8798 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || ||||| || || || ||||| |||||| || | || || | || || Sbjct 8799 TATGCCTTCCTTGTCCTGAATTTTCGCTTTTACATTTTCGATGGTGTCTGATGGCTCGAC 8858 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||| || || | |||||| |||||||||||||| Sbjct 8859 CTCAAGGGTGATGGTCTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 8906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499593661354720