Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_010583.1 Length=111382 Score E Sequences producing significant alignments: (Bits) Value seq2768 237 1e-57 >seq2768 Length=8677 Score = 237 bits (262), Expect = 1e-57 Identities = 472/692 (68%), Gaps = 18/692 (3%) Strand=Plus/Minus Query 50859 ACTGATCTTCATAGATATGAAGATTAATAATCTTTTGACGAGCAATACCTGGCTTAAGAC 50918 ||||||| ||||| ||||| ||| | |||||| ||| ||| | || | |||| | | Sbjct 1788 ACTGATCCTCATAAATATGCGCATTCACAATCTTGTGATAAGCCTTTCCAGCCTTATGTC 1729 Query 50919 CTGTAATCTGTGCCATAATAGCTAGAAGTGCATAGCATTGCACCATATTAAATACTTGGC 50978 ||||||| || ||||| | ||||| || | | | || | ||||| ||||| Sbjct 1728 CTGTAATTTGAGCCATCAGAGCTAACAGAGTAAAAACCTGAATTTGGTTAAAATTTTGGC 1669 Query 50979 CCAGCAAG--AAATCATTAGACCTCTGGAAAGAGTTTAGGTATAGTGTATCACCTAAAAT 51036 ||| ||| | |||| || | || | || ||| ||| |||||||| |||| | Sbjct 1668 CCA--AAGGTACATCACACGAACGTTGTGATGATGTTAAGTAAAGTGTATCCCCTACCAA 1611 Query 51037 AGAGAATTGATGGGTATGCATACACGGACGTAGGCATCCTTTACGAAATTCCCCACGGGT 51096 |||||| ||| ||||||||||| || |||||||| || || ||| ||||| |||| Sbjct 1610 AGAGAAGGTATGAGTATGCATACAAGGTCGTAGGCAACCCATATCAAACTCCCCT-GGGT 1552 Query 51097 TCCA-AAAGTTAAAATTTCTCCACGATCGTCAATCCCTCTTTTCAAATTATGATAGACTT 51155 | | ||||| | |||||| |||||||| ||||| ||| || || | || ||||| | Sbjct 1551 TATAGAAAGTCAGAATTTCACCACGATCATCAATACCTTTTCGTAAGTCATCATAGATCT 1492 Query 51156 TGGCTAACTGATCAAATACCATACCATCAGAATTAGTCCAATGACGTCCTTGAACACCAT 51215 | | ||| ||||| | |||| ||||| ||| |||||| || ||||| || || | Sbjct 1491 TACGAAGCTGGTCAAACTCTTTACCTTCAGAGTTACGCCAATGGCGCCCTTGGACTCCGT 1432 Query 51216 AGACTCGTCCCATATCATCCTCGCCTTTACGGAATGGATTACCTAGCCAGGCAATATTTT 51275 | ||||| ||||||||||| || |||||||| | || ||| ||| ||| || ||||| Sbjct 1431 ATACTCGCCCCATATCATCTTCACCTTTACGATAAGGGTTAGCTAACCAAGCTCCATTTT 1372 Query 51276 CATTTGCATTAGCATTCCATGTATTAACACCAATAGCGCGGAATTGTGCTGCTGAGTCGT 51335 | || ||||| |||||||| |||||| ||||| || ||||| || || || ||| | Sbjct 1371 CGTTAGCATTTGCATTCCAAGTATTACAGCCAATGGCTCGGAACTGAGCAGCATTGTCAT 1312 Query 51336 ACCCACGGAGATATCCGATCATTTCCATTATTGCTTGTTT--AGCAAATGCTTTACGAGT 51393 | ||||| | || || | | || || ||| || || || | ||| || || Sbjct 1311 ATCCACGCAAGTAGCCTAATAGCTCAGCAATAGCTGCCTTCCAGTAACT--TTTTCGGGT 1254 Query 51394 AGTTACTAGCGGCAGTTCTCCTGCTCCTACGTTAAAGGTA----AAGTCTGCATCAATAA 51449 || |||| || | ||| || ||||||| |||| || || |||| ||||| Sbjct 1253 CGTAACTAAGGGGAATTCATTCGCCCCTACGT----GGTACTCTAAATCAGCATTAATAA 1198 Query 51450 TGGTTAGGCAACGAACCCCTGTTCTAGGATTCGTTACCCATACACCCTCTTCAAGAATAC 51509 ||||| ||||| || |||| ||| |||||||| || || |||| || | Sbjct 1197 CGGTTAAACAACGCTTTCCAGTTCGCTCATTTTCAACCCATACGCCTTCATCAACTATGC 1138 Query 51510 GTTTTCCAGTTTCAATATATTGCTTCATTTAA 51541 ||| | || | |||||||||||||||| Sbjct 1137 GTTGACACAAATCTAGATATTGCTTCATTTAA 1106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356262044617124