Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_011041.1 Length=137947 Score E Sequences producing significant alignments: (Bits) Value seq2064 127 2e-24 >seq2064 Length=2520 Score = 127 bits (140), Expect = 2e-24 Identities = 150/200 (75%), Gaps = 5/200 (3%) Strand=Plus/Plus Query 133692 AAGCCACCGCCACCTTGCCAGCTTGCAGACTTAGAAATACCACCTTGATCTTCACCATCA 133751 || || || ||||||||||| | ||| || ||||||||||| || ||||||| Sbjct 593 AAACCGCCTCCACCTTGCCAATTCACAGTAGATGAGATACCACCTTGCTC---ACCATCA 649 Query 133752 ATCACTTTTTGCAAG-CGAGGGATAATATGGGTATGACAATGATCACCCAGTTCGATCAA 133810 || ||||||| |||| ||||| ||||||||||| | ||| || |||| ||| ||| Sbjct 650 ATAACTTTTT-CAAGACGAGGAATAATATGGGTCTTTGCATGCTCGCCCATTTCAATCCC 708 Query 133811 GATCCAACGTCTTTTCATCTTGTGGGCTACAGCAGCAGTAGTTCCCGAACCGCCGAATGA 133870 || | |||||| ||||||||||||||||||| ||||| ||||| ||||| ||| || Sbjct 709 AATATAGCGTCTTCTCATCTTGTGGGCTACAGCTGCAGTTGTTCCTGAACCAAGGAAAGA 768 Query 133871 ATCCAATACCAAATCACCTT 133890 || | || | |||||||| Sbjct 769 GTCAAGAACAATATCACCTT 788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441257232699360