Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq7149 125 7e-24 >seq7149 Length=218332 Score = 125 bits (138), Expect = 7e-24 Identities = 366/569 (64%), Gaps = 6/569 (1%) Strand=Plus/Plus Query 95005 CAGTTCGACCTCTGGGGTGTGAAGCCCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCT 95064 |||| |||| | |||| ||| | |||| | | ||||| || |||| || || || Sbjct 123473 CAGTACGACATGTGGGATGTCATGCCCACAGATCTGTGGGATTGGGCGGCGTTAAAGGCG 123532 Query 95065 GATGTTATCAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCC 95124 | | |||||| || || | |||| || ||||| ||||||| ||||||||||| || Sbjct 123533 AAAATCGCCAAACATGGCGTAAGAAACTCGTTGCTTCTGGCCCCAATGCCCACGGCTTCA 123592 Query 95125 ACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAAC 95184 || || || ||||| || || ||||| |||| || | ||| ||| | |||| Sbjct 123593 ACCGCCCAAATCCTGGGAAATAACGAAAGCGTCGAGCCGTACACTAGTAACATTTACACT 123652 Query 95185 AGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACG 95244 || | || || ||||||| || | || |||| |||| || || |||| |||| Sbjct 123653 CGGAGAGTCCTGTCCGGGGAGTTTCAAGTGGTCAATCAGCATCTTCTCAAGGACTTGACC 123712 Query 95245 TCTCTGGGTGTGTGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCA---ACGGCTCC 95301 || |||||| |||| | | ||||||||| | || |||| ||||||| Sbjct 123713 GAAAGAGGACTGTGGGACGACACGATGAAGAACCAAGTCATA---GCCAATCACGGCTCG 123769 Query 95302 GTCCAGAACATCCCGCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAG 95361 | || |||||||| | || || || ||| | ||||| |||||||||| |||||||| Sbjct 123770 ATACAAAACATCCCCGACATCCCTGATGACTTGAAGGCAATCTACAAGACGGTGTGGGAA 123829 Query 95362 ATCCCGCAGCGCGTGATACTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAGAGN 95421 || |||| || || ||||| || || | ||||| | || ||| ||| || Sbjct 123830 ATTTCGCAAAAAGTCATCCTCGATATGGCCGCGGATCGCGGCGCATTTATCGACCAAAGC 123889 Query 95422 NNNNNNNNNNNNNNNNNNATGGCCGAGCCCAGTCGCGGAAAAATAACGTCCATGTTGTTC 95481 || | | |||| ||| | | || ||| || Sbjct 123890 CAAAGTTTGAACATCCACATTGAAAAAGCCAGCTACGGCGTTCTGTCCTCGATGCACTTT 123949 Query 95482 TACGGGTGGAGAAAGGGTCTCAAGACCGGTATGTATTATTTGCGAACCAGGCCAAAGGCG 95541 ||||| |||| ||||| || || ||||| |||||||||||| |||||| ||| || Sbjct 123950 TACGGTTGGAAGAAGGGCCTGAAAACCGGAATGTATTATTTGAGAACCAAGCCGGCCGCC 124009 Query 95542 GACTCCATACAGTTCGCCCTAGAAAAGTC 95570 | |||| |||||| || | || ||||| Sbjct 124010 AATCCCATCCAGTTCACCGTCGATAAGTC 124038 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 94480 CAGGTGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAAC 94539 || ||||| || || ||||||||||| ||| ||| ||| | |||| ||| |||||| Sbjct 122907 CAAGTGGAAACCGGGACGCCCTACATGCTGTACAAAGACGCCTGCAACCGCAAATCCAAC 122966 Query 94540 CAGCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACT 94599 ||| || |||| || ||| |||||| ||||| ||||| || || || || || ||| Sbjct 122967 CAGAAGAACCTGGGCACGATAAAGAGCAGCAATCTTTGCACGGAAATCGTTGAATACACT 123026 Query 94600 TCTCCGGACGAGATTGCTGTGTGTAACCTGGGCTC 94634 || | || || || || || || || |||| ||| Sbjct 123027 TCAGCCGATGAAATCGCCGTTTGCAATCTGGCCTC 123061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494672565080480