Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq7149 141 9e-29 seq5761 107 2e-18 seq7010 102 8e-17 seq6955 102 8e-17 seq7453 91.5 1e-13 seq7343 91.5 1e-13 >seq7149 Length=218332 Score = 141 bits (156), Expect = 9e-29 Identities = 310/459 (68%), Gaps = 4/459 (1%) Strand=Plus/Minus Query 153303 GCCAGTTCGCAGCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTG 153362 |||||||||||||| | ||| ||||| |||||||| | |||||| || | || || Sbjct 123361 GCCAGTTCGCAGCTGGTCTCCAGCGCCCCATAGTACAACGTTTCGAATATCCGCTTGTTC 123302 Query 153363 AGAACGGCCGCTTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGA 153422 | || || ||| || ||| ||| | ||||| |||| || | |||||||||||||| Sbjct 123301 AAAAGGGTCGCATCAGGGCTATCGAAGGGCATTCGCATCAAAATGAAGGCGTCGGCCAGG 123242 Query 153423 CCCTGGATACCGACGCCGATGGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCG-CTAT 153481 || ||||| || | || || || | ||| | ||| | | | || |||| || Sbjct 123241 CCTTGGATTCCAATCCCTATAGGCCTGTGCCGCATGTTCGAGTTCTTTGC-CTCGATTAC 123183 Query 153482 GGGATAGTGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGC 153541 || || || || ||||| |||| | || ||| || ||||| || || || Sbjct 123182 CGGGTAAAAGTTCACGTCAATAATCTTGTCCAAATTCCGCGTGACTACTTTCGTGATGGC 123123 Query 153542 CTTAAGTTTCTCGAAATCATAGGTCATTTCG-TCGACGCGTACGCATCGATTCACGGCAA 153600 ||| | |||||||| ||| | || || || || || ||| | || || || | Sbjct 123122 CTTTAACTTCTCGAAGTCAAAACTC-TTCCGATCAGCGGATACAAACATGTTAACCGCCA 123064 Query 153601 TAGACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGC 153660 || |||||||| || ||||| | || ||||| |||| | ||||| || | || Sbjct 123063 CTGAGGCCAGATTGCAAACGGCGATTTCATCGGCTGAAGTGTATTCAACGATTTCCGTGC 123004 Query 153661 AGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGT 153720 | || ||||||| ||||| ||||| || | ||| ||| |||||| ||||| |||| Sbjct 123003 AAAGATTGCTGCTCTTTATCGTGCCCAGGTTCTTCTGGTTGGATTTGCGGTTGCAGGCGT 122944 Query 153721 CTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCG 153759 ||||| | |||||||| || ||||| || ||||||| Sbjct 122943 CTTTGTACAGCATGTAGGGCGTCCCGGTTTCCACTTGCG 122905 Score = 82.4 bits (90), Expect = 8e-11 Identities = 183/272 (67%), Gaps = 2/272 (1%) Strand=Plus/Minus Query 154246 TGTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCG 154305 |||||||||| || ||||| || ||| | | |||| ||| || || | | ||| | Sbjct 122241 TGTAGATGCCCTCAATGCTGTCATCGGGCATCATCAGCAGGAAGCAGGAGGATAGTTGAG 122182 Query 154306 GAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCA 154365 | || |||| | || || || |||||||| |||||||| || | || | || Sbjct 122181 GTCTGGGCGTGGCGGCGTTGAACAGAGTGGGACTGGCGTGCGTGAAGAACTTCTCTGACA 122122 Query 154366 TCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGC 154425 | | | ||| |||||||| || || ||||| || || || ||||| | | ||| | Sbjct 122121 TGAAGTTGTAGGTTTCGATTGCTGAATCAATATCTTCTCCATGGATGCCCACTGAGACCC 122062 Query 154426 GCATGAGCATGTGCTGCGGACGTTCGGCGACTCTAT-TGTCAATCTTCAAGAGATATCCA 154484 ||| | |||||||||||| | ||| | | ||| | || ||||||| ||||| Sbjct 122061 TCATCAACATGTGCTGCGGCCTTTCAAC-AATCTTTCCGTTGATCTTCAGAAGATACGAC 122003 Query 154485 TTTTCGAGGGTTTTGTAACCGAAATACTTGTA 154516 | || ||||||||| | || || || ||||| Sbjct 122002 CTCTCCAGGGTTTTGAATCCAAAGTAGTTGTA 121971 Score = 82.4 bits (90), Expect = 8e-11 Identities = 164/237 (69%), Gaps = 6/237 (3%) Strand=Plus/Minus Query 153026 CTGGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACA--TTGCTAGTG 153083 ||| ||||||||||||||||| || | || |||| || | | | || | || |||||| Sbjct 123691 CTGATTGACCACTTGAAACTCCCCGGACAGGACTC-TC-CGAGTGTAAATGTTACTAGTG 123634 Query 153084 AAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTAC 153143 | || || | | ||||||||| || || ||||| || || | || || ||||| Sbjct 123633 TACGGCTCGACGCTTTCGTTATTTCCCAGGATTTGGGCGGTTGAAGCCGTGGGCATTGGG 123574 Query 153144 GCCACCAACAAAGAATTCCGCAAGCCGTG-CGCTCGAATGTCGTCCTTCAACGCCTGCCA 153202 |||| | ||| || || | | ||| || ||| | ||| |||| |||||| ||| Sbjct 123573 GCCAGAAGCAACGAGTTTCTTACGCCATGTTTGGCGATTTTCG-CCTTTAACGCCGCCCA 123515 Query 153203 ATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACT 153259 ||||||||| | | || | | | ||||||||||||||| | | |||| |||| Sbjct 123514 ATCCCACAGATCTGTGGGCATGACATCCCACATGTCGTACTGGAGGATTCCTTGACT 123458 >seq5761 Length=8615 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| | | || ||||| | | | || ||||| || |||||||||||| Sbjct 325 CCTCCTCTCAATCTGAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAT 266 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || | || ||||| | |||| | |||||| || || |||||| Sbjct 265 AGGGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGCTGCTGATCGGGAGGT 206 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| |||| | ||||| | ||| | |||||| | | ||| || Sbjct 205 ATGCCTTCCTTGTC-CTGAATTTTCGCTTTTACATTTTCGATGGTGTCTGATGGCTCGAC 147 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || |||||||| |||||||| || ||||| ||||| Sbjct 146 CTCAAGGGTGATGGTCTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 99 >seq7010 Length=35453 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| | | || || || | | | || ||||| || |||||||||||| Sbjct 8680 CCTCCTCTCAATCTGAGCACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAT 8739 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || | || ||||| | |||| | |||||| || || |||||| Sbjct 8740 AGGGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGCTGCTGATCGGGAGGT 8799 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| |||| | ||||| | ||| | |||||| | | ||| || Sbjct 8800 ATGCCTTCCTTGTC-CTGAATTTTCGCTTTTACATTTTCGATGGTGTCTGATGGCTCGAC 8858 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || |||||||| |||||||| || ||||| ||||| Sbjct 8859 CTCAAGGGTGATGGTCTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 8906 >seq6955 Length=469295 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| || | |||||| ||||||| | || || || || ||||||||||| | Sbjct 94866 CCTCCTCTCAGTCTCAAAACCAAATGTAAAGTGGATTCTTTCTGGATGTTGTAGTCAGAC 94807 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || | ||||| |||| | | |||| | ||||||||| ||||| Sbjct 94806 AATGTACGTCCATCTTCTAACTGTTTGCCGGCAAAAATTAACCTCTGTTGGTCTGGAGGA 94747 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| | || | ||||| | ||| | ||| || | | || || Sbjct 94746 ATTCCTTCCTTGTC-CTGAATCTTGGCTTTAACATTTTCAATGGTATCAGATGGTTCGAC 94688 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| ||||| || |||||||||||||| ||||| Sbjct 94687 TTCAAGTGTAATTGTTTTGCCAGTAAGGGTTTTTACAAAAATTTGCAT 94640 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || |||||||| |||||||||||| | || || ||||| | || || || | | Sbjct 95517 GATTCCTTTTGGATGTTGTAGTCGGAAAGTGTGCGGCCATCCTCCAACTGCTTTCCAGCA 95458 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||| || || || ||||| ||||| ||| || ||| | Sbjct 95457 AAGATGAGACGCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATCTTAGCTTTAACG 95398 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | ||| || | | ||||| || | || | ||||| |||||||| ||||| Sbjct 95397 TTTTCGATGGTATCTGAGGCTTCCACTTCCAAAGTGATGGTTTTTCCAGTCAGGGTTTTA 95338 Query 138601 ACAAAAATCTGCAT 138614 ||||| || ||||| Sbjct 95337 ACAAAGATTTGCAT 95324 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| || |||||||| || || ||| || ||| || | |||||| || | Sbjct 95289 GATTCCTTCTGGATGTTGTAATCAGACAAAGTTCGGCCGTCTTCCAATTGTTTTCCTGCG 95230 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 | || || | ||||||||| || || || ||||||||||| ||| || ||| | Sbjct 95229 AAAATCAGTCTCTGTTGGTCTGGGGGAATTCCTTCTTTGTCCTGGATCTTGGCTTTAACA 95170 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | || || | | ||| || || | || | ||||| ||||| |||||||| Sbjct 95169 TTTTCAATAGTATCAGAAGGCTCGACTTCAAGTGTAATGGTTTTTCCAGTAAGAGTTTTG 95110 Query 138601 ACAAAAATCTGCAT 138614 |||||||| ||||| Sbjct 95109 ACAAAAATTTGCAT 95096 >seq7453 Length=213858 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || | ||| | ||| || ||||| | | |||||||| || ||||||||||| Sbjct 107663 GCCTCCCCTCAACCTCAACACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCCGA 107722 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || ||| || || || || || || |||| |||| || ||||| ||||| ||||| Sbjct 107723 CAAAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCGGGAGG 107782 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || ||||| || |||||| ||| | | ||| | || || | | ||| || Sbjct 107783 GATGCCCTCTTTATCCTGGATTTTGGCTTTAACATTTTCGATAGTATCTGATGGCTCGAC 107842 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || || |||||||| || || || |||||||| Sbjct 107843 CTCAAGAGTGATGGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 107890 >seq7343 Length=933009 Score = 91.5 bits (100), Expect = 1e-13 Identities = 294/447 (66%), Gaps = 11/447 (2%) Strand=Plus/Plus Query 52395 GAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCC 52454 ||| | || || || ||||| ||||| || | ||||| || ||||||||||| | Sbjct 374830 GAGAGAATCGTCGCTTTCGCAGCTGTCGAAGGAATATTTTTCTCTGGCAGCTTTGCTTCG 374889 Query 52455 ATCTTTTACATTAA--AACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGA 52512 ||||| | |||| |||| ||| | |||||||||||||| || || || ||| Sbjct 374890 ATCTTCTGGCTTAAGAAACGC--GGCTTGATGCCCGGCCTGACATTTTCAAATGAACTGA 374947 Query 52513 TATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGCGTGA 52572 | || | ||||||||| |||| |||||||| || | ||||| | | | Sbjct 374948 TCTCCAGAGACGAAGGATTGCATTGTGACTTTGCCTG--TTTACTATTCTCCTATCTCGT 375005 Query 52573 CCGAAAAATTGGATTCGGACACGATCCTGAGCATG-TTCAAGGAGGCGGTGGCTATCGAA 52631 | ||||| || | | | |||| ||| || | || || | ||||||| Sbjct 375006 TC-AAAAACCCTCCAAAGAAAGAGTGACGGGCATTATTCGAG-ATGCAGTTGTTATCGAA 375063 Query 52632 AAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATG 52691 |||||||| | ||| || ||||| || || | || |||||| || |||| Sbjct 375064 CAGGAGTTTCTGTCGGATGCACTGCCTGTTAGTCTTATCGGGATGAACTGCAAGCTCATG 375123 Query 52692 TGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTAC 52751 ||| ||||||| || |||||||| || || ||| | || | ||||| |||| Sbjct 375124 TGCCAGTACATAGAATTTGTGGCTGACCGACTGCTAATGGAACTCGGTTGTGAAAAGGTT 375183 Query 52752 TTCAACGCTCGC-AATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAA 52810 | || | || | |||||||| || |||||| | || || |||||||||||||| Sbjct 375184 TATAATG-TCACTAATCCGTTCGATTTTATGTCGATAATATCTACAGAGGGCAAGACCAA 375242 Query 52811 CTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||||||||| ||| |||||||| || Sbjct 375243 CTTTTTCGAAAAGAAGGTCGGCGAATA 375269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496211607543360