Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq6955 140 2e-28 seq5761 131 1e-25 seq7010 125 5e-24 >seq6955 Length=469295 Score = 140 bits (154), Expect = 2e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| ||| || | || || ||||| || || || || || ||||||||||| Sbjct 95322 CCACCTCTCAACCTGAGCACCAAGTGAAGAGTGGATTCCTTCTGGATGTTGTAATCAGAC 95263 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | ||| ||||||| |||||||| || ||| | |||| | ||||||||| ||| Sbjct 95262 AAAGTTCGGCCGTCTTCCAATTGTTTTCCTGCGAAAATCAGTCTCTGTTGGTCTGGGGGA 95203 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||| ||||| || ||| ||| ||| |||| |||||||| | || || Sbjct 95202 ATTCCTTCTTTGTCCTGGATCTTGGCTTTAACATTTTCAATAGTATCAGAAGGCTCGACT 95143 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||||||||||| || || |||||||| |||||||||||||| Sbjct 95142 TCAAGTGTAATGGTTTTTCCAGTAAGAGTTTTGACAAAAATTTGCAT 95096 Score = 132 bits (146), Expect = 3e-26 Identities = 168/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| || ||| ||||| ||||| | || || ||||| || |||||||| || | Sbjct 94866 CCTCCTCTCAGTCTCAAAACCAAATGTAAAGTGGATTCTTTCTGGATGTTGTAGTCA--G 94809 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | ||| || | |||||||| |||||||| || | || || | ||||||||| | Sbjct 94808 ACAATGTACGTCCATCTTCTAACTGTTTGCCGGCAAAAATTAACCTCTGTTGGTCTGGAG 94749 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||||||||||||||| ||| ||| ||| ||| |||| || ||||| ||| | Sbjct 94748 GAATTCCTTCCTTGTCCTGAATCTTGGCTTTAACATTTTCAATGGTATCAGATGGTTCGA 94689 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || | ||||| ||||| || || || |||||||||||||||||||| Sbjct 94688 CTTCAAGTGTAATTGTTTTGCCAGTAAGGGTTTTTACAAAAATTTGCAT 94640 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| |||||| || || ||||| || || || |||||||| ||||| ||||| Sbjct 94638 CCACCTCTCAATCTCAACACCAAATGCAGAGTGGATTCTTTTTGGATGTTATAATCTGAT 94579 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | ||||| || |||||||||||| | ||||| || |||||||| ||| Sbjct 94578 AGGGTGCGGCCATCTTCCAACTGTTTGCCAGCGAAAATCAATCGTTGTTGGTCTGGGGGA 94519 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||||||||| ||| ||| ||| || | || ||||| || ||| || Sbjct 94518 ATTCCTTCCTTGTCTTGAATCTTGGCTTTAACGTTCTCAATAGTGTCTGATGGTTCAACC 94459 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | || || ||||| || |||| ||| || || ||||| ||||| Sbjct 94458 TCAAGTGTGATAGTTTTGCCAGTCAAAGTCTTCACGAAAATCTGCAT 94412 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 14980 GTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCA 15039 || || |||||||| ||||| ||||| || | | | ||||| ||||||||||| Sbjct 95976 GTGGATTCTTTTTGGATGTTATAATCTGATAGGGTGCGGCCATCTTCCAATTGTTTGCCT 95917 Query 15040 GCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TTTGCTTTT 15098 ||| | |||| | ||||||||| ||||||||||||||||| || ||||| || Sbjct 95916 GCGAAAATCAGTCTCTGTTGGTCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTGCCTTA 95857 Query 15099 TACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGT 15158 ||| |||| || ||||| ||| || || | ||||| ||||| || |||||||| Sbjct 95856 -ACATTTTCGATGGTATCAGATGGTTCGACTTCAAGTGTAATAGTTTTGCCAGTCAGAGT 95798 Query 15159 TTTTACAAAAATTTGCAT 15176 ||| |||||||| ||||| Sbjct 95797 TTTAACAAAAATCTGCAT 95780 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| ||| || | || || ||||| || || || || |||||||||||||| Sbjct 95778 CCTCCTCTCAACCTGAGCACCAAGTGAAGAGTGGATTCCTTCTGTATGTTGTAATCCGAT 95719 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | ||||||| ||||||||||| ||| | ||||| | ||| ||||| ||| Sbjct 95718 AAAGTGCGGCCGTCTTCCAATTGTTTGCCTGCGAAAATCAACCTCTGCTGGTCTGGAGGA 95659 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| ||||| || || ||| ||| | || || || || ||| || Sbjct 95658 ATGCCTTCTTTGTCCTGGATCTTAGCTTTAACATTCTCGATGGTGTCTGAGGGTTCCACT 95599 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || ||||| || ||||| ||||| || ||||||||||| Sbjct 95598 TCCAAAGTGATAGTTTTTCCAGTCAGGGTTTTCACGAAAATTTGCAT 95552 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| || || | || || |||||||| || || ||||| |||||||| ||| Sbjct 95550 CCTCCTCTCAGCCTGAGCACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCGGAA 95491 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | || || || || || ||||| | || | |||||| ||||| || Sbjct 95490 AGTGTGCGGCCATCCTCCAACTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGGGGG 95431 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| || || ||| || |||| || ||||| ||| || Sbjct 95430 ATGCCTTCCTTGTCTTGGATCTTAGCTTTAACGTTTTCGATGGTATCTGAGGCTTCCACT 95371 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || |||||||| || ||||| ||||| ||||| |||||||| Sbjct 95370 TCCAAAGTGATGGTTTTTCCAGTCAGGGTTTTAACAAAGATTTGCAT 95324 >seq5761 Length=8615 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| |||||| | || ||||||||||| || || || || |||||||| ||| Sbjct 325 CCTCCTCTCAATCTGAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAT 266 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | ||||| || || || |||||| | ||||||||||| || ||| || Sbjct 265 AGGGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGCTGCTGATCGGGAGGT 206 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| |||||| ||||||| |||| || || || || || Sbjct 205 ATGCCTTCCTTGTCCTGAATTTTCGCTTTTACATTTTCGATGGTGTCTGATGGCTCGACC 146 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||| ||||| ||||| || |||||||| || ||||||||||| Sbjct 145 TCAAGGGTGATGGTCTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 99 >seq7010 Length=35453 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| |||||| | || || |||||||| || || || || |||||||| ||| Sbjct 8680 CCTCCTCTCAATCTGAGCACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAT 8739 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | ||||| || || || |||||| | ||||||||||| || ||| || Sbjct 8740 AGGGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGCTGCTGATCGGGAGGT 8799 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| |||||| ||||||| |||| || || || || || Sbjct 8800 ATGCCTTCCTTGTCCTGAATTTTCGCTTTTACATTTTCGATGGTGTCTGATGGCTCGACC 8859 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||| ||||| ||||| || |||||||| || ||||||||||| Sbjct 8860 TCAAGGGTGATGGTCTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 8906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357356335405580