Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq5761 127 2e-24 seq7010 123 2e-23 seq7453 114 1e-20 seq6955 114 1e-20 seq6233 114 1e-20 seq1586 114 1e-20 >seq5761 Length=8615 Score = 127 bits (140), Expect = 2e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 126896 AATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGA 126955 |||| | ||||||||| | || || || || || || ||||| ||| | || || Sbjct 316 AATCTGAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGATAGGGTACGT 257 Query 126956 GAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCC 127015 ||| || | ||| || |||||| ||||||| ||||||||||||||||||||||| ||| Sbjct 256 CCATCTTCCAACTGCTTACCAGCGAAGATCAAACGCTGCTGATCGGGAGGTATGCCTTCC 197 Query 127016 TTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTC 127075 |||||| |||||| || | | ||||| |||||| | |||||| || | ||| Sbjct 196 TTGTCCTGAATTTTCGCTTTTACATTTTCGATGGTGTCTGATGGCTCGACCTCAAGGGTG 137 Query 127076 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || || || || |||||||| || ||||| ||||| Sbjct 136 ATGGTCTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 99 >seq7010 Length=35453 Score = 123 bits (136), Expect = 2e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 126896 AATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGA 126955 |||| | |||||| || | || || || || || || ||||| ||| | || || Sbjct 8689 AATCTGAGCACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGATAGGGTACGT 8748 Query 126956 GAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCC 127015 ||| || | ||| || |||||| ||||||| ||||||||||||||||||||||| ||| Sbjct 8749 CCATCTTCCAACTGCTTACCAGCGAAGATCAAACGCTGCTGATCGGGAGGTATGCCTTCC 8808 Query 127016 TTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTC 127075 |||||| |||||| || | | ||||| |||||| | |||||| || | ||| Sbjct 8809 TTGTCCTGAATTTTCGCTTTTACATTTTCGATGGTGTCTGATGGCTCGACCTCAAGGGTG 8868 Query 127076 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || || || || |||||||| || ||||| ||||| Sbjct 8869 ATGGTCTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 8906 >seq7453 Length=213858 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 126901 CAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATC 126960 |||||||||||| | || ||||| || || || ||||| || || ||||| ||| Sbjct 107678 CAACACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCCGACAAAGTGCGTCCATC 107737 Query 126961 GTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 127020 || ||||| || || ||| |||||| |||||||| |||||||| |||||||| || || Sbjct 107738 TTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCGGGAGGGATGCCCTCTTTATC 107797 Query 127021 CGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGT 127080 | |||||| || | | ||||| || || | |||||| || | || | || Sbjct 107798 CTGGATTTTGGCTTTAACATTTTCGATAGTATCTGATGGCTCGACCTCAAGAGTGATGGT 107857 Query 127081 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| |||||||| || || || |||||||| Sbjct 107858 CTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 107890 >seq6955 Length=469295 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 126896 AATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGA 126955 |||| |||||||||||| | || ||||| |||||||| ||||| || | ||||| Sbjct 95085 AATCTCAACACCAAATGCAAAGTGGACTCCTTTTGAATGTTGTAGTCAGATAAAGTGCGT 95026 Query 126956 GAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCC 127015 ||| || | ||| ||||| || ||||||||| |||||| || || || ||||| ||| Sbjct 95025 CCATCCTCCAACTGCTTTCCTGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCTTCC 94966 Query 127016 TTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTC 127075 ||||| ||| ||| ||| | | || | ||||| | || ||||| | || Sbjct 94965 TTGTCTTGGATCTTCGCCTTAACGTTCTCAATTGTGTCTGAGGGTTCCACTTCCAAAGTA 94906 Query 127076 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | |||||||||||| | |||||| || || || ||||| Sbjct 94905 ATCGTTTTGCCGGTTAAAGTTTTCACGAAGATTTGCAT 94868 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || |||||||| || || ||||| | ||||| ||| || | ||||| || Sbjct 95976 GTGGATTCTTTTTGGATGTTATAATCTGATAGGGTGCGGCCATCTTCCAATTGTTTGCCT 95917 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | |||| || ||| || || ||||| || || ||||||||| ||| || ||| Sbjct 95916 GCGAAAATCAGTCTCTGTTGGTCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTGCCTTA 95857 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||||| ||| || | |||||||| | || | |||||||| ||||||||| Sbjct 95856 ACATTTTCGATGGTATCAGATGGTTCGACTTCAAGTGTAATAGTTTTGCCAGTCAGAGTT 95797 Query 127097 TTTACAAAAATCTGCAT 127113 || |||||||||||||| Sbjct 95796 TTAACAAAAATCTGCAT 95780 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| | |||| |||||||||||| | || || |||||||| || || ||||| Sbjct 94639 TCCACCTCTCAATCTCAACACCAAATGCAGAGTGGATTCTTTTTGGATGTTATAATCTGA 94580 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | ||||| ||| || | |||||| |||||| | |||||||| || || || || || Sbjct 94579 TAGGGTGCGGCCATCTTCCAACTGTTTGCCAGCGAAAATCAATCGTTGTTGGTCTGGGGG 94520 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA--GTTGTTCGACGGTGTCCGTACTCTCG 127063 || || ||||||| | ||| | | |||| | ||| || | ||||| | || Sbjct 94519 AATTCCTTCCTTGT-CTTGAATCTTGGCTTTAACGTT-CTCAATAGTGTCTGATGGTTCA 94462 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || | || | |||||||| |||| ||| || || ||||||||||| Sbjct 94461 ACCTCAAGTGTGATAGTTTTGCCAGTCAAAGTCTTCACGAAAATCTGCAT 94412 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 126898 TCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGA 126957 || ||| |||||||||| || || ||||| || || ||||| || || || || Sbjct 94855 TCTCAAAACCAAATGTAAAGTGGATTCTTTCTGGATGTTGTAGTCAGACAATGTACGTCC 94796 Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017 ||| |||| |||||| || || | || || | ||| || || ||||| || || ||||| Sbjct 94795 ATCTTCTAACTGTTTGCCGGCAAAAATTAACCTCTGTTGGTCTGGAGGAATTCCTTCCTT 94736 Query 127018 GTCCGTGATTTTCTGCTTGAGT-TGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCA 127076 |||| ||| | | |||| | | ||| | ||| || | |||||||| | || | Sbjct 94735 GTCC-TGAATCTTGGCTTTAACATTTTCAATGGTATCAGATGGTTCGACTTCAAGTGTAA 94677 Query 127077 CCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||||||| || || |||||||||||||| ||||| Sbjct 94676 TTGTTTTGCCAGTAAGGGTTTTTACAAAAATTTGCAT 94640 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 ||||| ||||| || | ||||||||||| || || ||||| ||| | ||||| | Sbjct 94398 CGCAAAACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCGGAAAGAGTGCGTCCA 94339 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || | || ||||||||| | || | |||||||| || || || || || || ||| Sbjct 94338 TCTTCCAATTGCTTTCCAGCGAAAATGAGACGCTGCTGGTCTGGGGGGATTCCTTCTTTG 94279 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| |||||| ||| | | |||| ||||| | | || ||||| | || | Sbjct 94278 TCCTGGATTTTAGCCTTAACATTCTCGATTGTGTCTGAAGGTTCCACTTCCAAAGTGATG 94219 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| || || | ||||| || || |||||||| Sbjct 94218 GTTTTTCCAGTTAATGTTTTCACGAAGATCTGCAT 94184 >seq6233 Length=1575 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 126901 CAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATC 126960 |||||||||||| | || ||||| || || || || || || || ||||| ||| Sbjct 626 CAACACCAAATGCAAAGTGGACTCCTTCTGGATGTTATAGTCCGACAAAGTGCGTCCATC 567 Query 126961 GTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 127020 || ||||| || || ||| |||||| |||||||| |||||||| |||||||| ||||| Sbjct 566 TTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCGGGAGGGATGCCCTCTTTGTC 507 Query 127021 CGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGT 127080 | |||||| || | | ||||| ||| || | |||||| || | || | || Sbjct 506 CTGGATTTTGGCTTTAACATTTTCGATGGTATCTGATGGCTCGACCTCAAGAGTGATGGT 447 Query 127081 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || |||||||| || || || |||||||| Sbjct 446 CTTCCCCGTCAGAGTCTTCACGAAGATCTGCAT 414 >seq1586 Length=2413 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 126901 CAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATC 126960 |||||||||||| | || ||||| || || || || || || || ||||| ||| Sbjct 2064 CAACACCAAATGCAAAGTGGACTCCTTCTGGATGTTATAGTCCGACAAAGTGCGTCCATC 2005 Query 126961 GTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 127020 || ||||| || || ||| |||||| |||||||| |||||||| |||||||| ||||| Sbjct 2004 TTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCGGGAGGGATGCCCTCTTTGTC 1945 Query 127021 CGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGT 127080 | |||||| || | | ||||| ||| || | |||||| || | || | || Sbjct 1944 CTGGATTTTGGCTTTAACATTTTCGATGGTATCTGATGGCTCGACCTCAAGAGTGATGGT 1885 Query 127081 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || |||||||| || || || |||||||| Sbjct 1884 CTTCCCCGTCAGAGTCTTCACGAAGATCTGCAT 1852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475452132493120