Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq7149 129 5e-25 seq6955 127 2e-24 seq5761 113 4e-20 seq7010 109 5e-19 >seq7149 Length=218332 Score = 129 bits (142), Expect = 5e-25 Identities = 128/166 (77%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 123589 TTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACA 123648 |||||| | ||||| |||||||| ||||| |||||||| |||||||||||||||||| Sbjct 122896 TTATCGCCTCGCAAGTGGAAACCGGGACGCCCTACATGCTGTACAAAGACGCCTGCAACC 122955 Query 123649 GGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTA 123708 | ||| |||| |||| ||| |||| || ||||| | || ||||||||| | ||||| Sbjct 122956 GCAAATCCAACCAGAAGAACCTGGGCACGATAAAGAGCAGCAATCTTTGCACGGAAATCG 123015 Query 123709 TCGAATACAGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTC 123754 | ||||||| |||||| || | ||||| || ||| |||| || Sbjct 123016 TTGAATACACTTCAGCCGATGAAATCGCCGTTTGCAATCTGGCCTC 123061 >seq6955 Length=469295 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || | | ||| | ||| | || || || |||||||| ||||| || ||||| Sbjct 95325 ATTCCACCTCTCAACCTGAGCACCAAGTGAAGAGTGGATTCCTTCTGGATGTTGTAATCA 95266 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || |||||||||||||||||| | |||| || || ||||| || Sbjct 95265 GACAAAGTTCGGCCGTCTTCCAATTGTTTTCCTGCGAAAATCAGTCTCTGTTGGTCTGGG 95206 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| |||||||| || || || || ||| | ||| | || || |||| |||| Sbjct 95205 GGAATTCCTTCTTTGTCCTGGATCTTGGCTTTAACATTTTCAATAGTATCAGAAGGCTCG 95146 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || |||| ||||| || || |||||||| |||||||||||||| Sbjct 95145 ACTTCAAGTGTAATGGTTTTTCCAGTAAGAGTTTTGACAAAAATTTGCAT 95096 Score = 123 bits (136), Expect = 2e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 |||||||| | |||||| || ||||| |||||||| |||||||| | ||| | Sbjct 94626 CTCAACACCAAATGCAGAGTGGATTCTTTTTGGATGTTATAATCTGATAGGGTGCGGCCA 94567 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || ||||| ||||| || ||| | ||||||||||| ||||| || ||||| ||||| || Sbjct 94566 TCTTCCAACTGTTTGCCAGCGAAAATCAATCGTTGTTGGTCTGGGGGAATTCCTTCCTTG 94507 Query 45246 TCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 ||||||| | || | || | || | || | ||||| || | || || || || || | Sbjct 94506 TCTTGAA-TCTTGGCTTTAACGTTCTCAATAGTGTCTGATGGTTCAACCTCAAGTGTGAT 94448 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 |||||||| || | ||| || || ||||| |||||| Sbjct 94447 AGTTTTGCCAGTCAAAGTCTTCACGAAAATCTGCATC 94411 Score = 122 bits (134), Expect = 8e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | | |||||||| | ||||| || || |||||||| || || || || Sbjct 95097 ATTCCTCCCCTCAATCTCAACACCAAATGCAAAGTGGACTCCTTTTGAATGTTGTAGTCA 95038 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| ||||| || |||||||| | ||||||| |||||||| || Sbjct 95037 GATAAAGTGCGTCCATCCTCCAACTGCTTTCCTGCAAAGATCAATCTCTGCTGGTCTGGG 94978 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||||||||| || ||||| | | || | | | || | || | ||||| || | || Sbjct 94977 GGAATGCCTTCCTTGTCTTGGA-TCTTCGCCTTAACGTTCTCAATTGTGTCTGAGGGTTC 94919 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | ||||| |||||||||||||| |||||| || || |||||||| Sbjct 94918 CACTTCCAAAGTAATCGTTTTGCCGGTTAAAGTTTTCACGAAGATTTGCAT 94868 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 45144 GTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCT 45203 || ||||| |||||||| |||||||| | ||| ||| ||||||||||| ||| Sbjct 95976 GTGGATTCTTTTTGGATGTTATAATCTGATAGGGTGCGGCCATCTTCCAATTGTTTGCCT 95917 Query 45204 GCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTG 45263 ||| | |||| || || ||||| || ||||| ||||| || || || || ||| || Sbjct 95916 GCGAAAATCAGTCTCTGTTGGTCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTGCCTTA 95857 Query 45264 ATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTT 45323 | ||| | ||| || || | |||||||| || |||| |||||||| || |||||| Sbjct 95856 ACATTTTCGATGGTATCAGATGGTTCGACTTCAAGTGTAATAGTTTTGCCAGTCAGAGTT 95797 Query 45324 TTTACAAAAATTTGCAT 45340 || |||||||| ||||| Sbjct 95796 TTAACAAAAATCTGCAT 95780 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | | ||| | ||| | || || || |||||||| || || || ||||| Sbjct 95781 ATTCCTCCTCTCAACCTGAGCACCAAGTGAAGAGTGGATTCCTTCTGTATGTTGTAATCC 95722 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || || ||||||||||| |||||| | ||||| | |||||||| || Sbjct 95721 GATAAAGTGCGGCCGTCTTCCAATTGTTTGCCTGCGAAAATCAACCTCTGCTGGTCTGGA 95662 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 |||||||||||||| || || || || ||| | || | |||||| || | || Sbjct 95661 GGAATGCCTTCTTTGTCCTGGATCTTAGCTTTAACATTCTCGATGGTGTCTGAGGGTTCC 95602 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | ||| | ||||| || || || ||||| || ||||||||||| Sbjct 95601 ACTTCCAAAGTGATAGTTTTTCCAGTCAGGGTTTTCACGAAAATTTGCAT 95552 Score = 102 bits (112), Expect = 7e-17 Identities = 163/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | || ||||| || | ||| | || ||||| || ||||| || || || Sbjct 94869 ATTCCTCCTCTCAGTCTCAAAACCAAATGTAAAGTGGATTCTTTCTGGATGTTGTAGTCA 94810 Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| | | | ||| || || ||||| || || | || || | || ||||| | Sbjct 94809 --GACAATGTACGTCCATCTTCTAACTGTTTGCCGGCAAAAATTAACCTCTGTTGGTCTG 94752 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | ||||| ||||| || || ||||| || ||| | ||| | ||| || || | | Sbjct 94751 GAGGAATTCCTTCCTTGTCCTGAATCTTGGCTTTAACATTTTCAATGGTATCAGATGGTT 94692 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||| || |||| |||||||| || || |||||||||||||||||||| Sbjct 94691 CGACTTCAAGTGTAATTGTTTTGCCAGTAAGGGTTTTTACAAAAATTTGCAT 94640 Score = 102 bits (112), Expect = 7e-17 Identities = 163/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | ||||| | ||| | || || || |||||||||||||| || || ||| Sbjct 95553 ATTCCTCCTCTCAGCCTGAGCACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCG 95494 Query 45171 CTGACGGTTTTAG--AATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 || || | | ||| ||||| || ||||| || | || | || |||||||| | Sbjct 95493 --GAAAGTGTGCGGCCATCCTCCAACTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTG 95436 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | || |||||||| || ||||| || || ||| | ||| | ||| || || | | Sbjct 95435 GGGGGATGCCTTCCTTGTCTTGGATCTTAGCTTTAACGTTTTCGATGGTATCTGAGGCTT 95376 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | ||||| | ||| | ||||| || || || ||||| ||||| |||||||| Sbjct 95375 CCACTTCCAAAGTGATGGTTTTTCCAGTCAGGGTTTTAACAAAGATTTGCAT 95324 >seq5761 Length=8615 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| | ||| || || |||||||| ||||| || || ||| | ||| ||| || Sbjct 308 CACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGATAGGGTACGTCCATCTTC 249 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 ||| || || || ||| | ||||| || ||||| || || || |||||||| || || || Sbjct 248 CAACTGCTTACCAGCGAAGATCAAACGCTGCTGATCGGGAGGTATGCCTTCCTTGTCCTG 189 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 |||||| ||| | ||| | |||||| || | |||||| || || || | || || Sbjct 188 AATTTTCGCTTTTACATTTTCGATGGTGTCTGATGGCTCGACCTCAAGGGTGATGGTCTT 129 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCATCG 45342 || || |||||||| || ||||||||||||| Sbjct 128 ACCAGTGAGAGTTTTCACGAAAATTTGCATCG 97 >seq7010 Length=35453 Score = 109 bits (120), Expect = 5e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || |||||||| ||||| || || ||| | ||| ||| ||||| || Sbjct 8704 TGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGATAGGGTACGTCCATCTTCCAACTGC 8763 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | ||||| || ||||| || || || |||||||| || || |||||||| Sbjct 8764 TTACCAGCGAAGATCAAACGCTGCTGATCGGGAGGTATGCCTTCCTTGTCCTGAATTTTC 8823 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||| | ||| | |||||| || | |||||| || || || | || || || || Sbjct 8824 GCTTTTACATTTTCGATGGTGTCTGATGGCTCGACCTCAAGGGTGATGGTCTTACCAGTG 8883 Query 45318 AGAGTTTTTACAAAAATTTGCATCG 45342 |||||||| || ||||||||||||| Sbjct 8884 AGAGTTTTCACGAAAATTTGCATCG 8908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451956937472480