Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_013643.1 Length=36270 Score E Sequences producing significant alignments: (Bits) Value seq1052 82.4 2e-11 >seq1052 Length=2393 Score = 82.4 bits (90), Expect = 2e-11 Identities = 114/160 (71%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 5822 GGAATTGGAGGATCAGACGTTGCAACAATCTTAGGCTTGAATCAATATAAATCAGCTTAT 5881 || ||||| || ||||||||||| ||||||||||||||| |||| | || | ||| Sbjct 980 GGTATTGGTGGTTCAGACGTTGCGGCAATCTTAGGCTTGAGCAAATACAGCTCCCCCTAT 1039 Query 5882 CAATTATGGCTAGAGAAAACAGGTCAAGTTGAGCTGAAAGATACAGAAAGCGAGCCAGCC 5941 ||||| ||||| || || ||||||| ||| ||| |||| | || ||||| || Sbjct 1040 CAATTGTGGCTGGATAAGACAGGTCGCTCTGAACTGGAAGACAATACCAGTGAGCCTGCG 1099 Query 5942 TATTGGGGAAATGTTTTAGAAGAAGTTGTTGCGAAAGAGT 5981 || ||||| || | | || || | || || ||||||| Sbjct 1100 TACTGGGGCAACATGCTGGAGGACATCGTAGCCAAAGAGT 1139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 115931126630592