Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq7149 168 1e-36 seq7343 136 6e-27 >seq7149 Length=218332 Score = 168 bits (186), Expect = 1e-36 Identities = 401/597 (67%), Gaps = 12/597 (2%) Strand=Plus/Minus Query 203833 CTTCGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTA 203892 ||| | ||| || || |||||||| |||| || |||| ||| || |||||| ||| || Sbjct 124042 CTTTGACTTATCGACGGTGAACTGGATGGGATTGGCGGCCGGCTTGGTTCTCAAATAATA 123983 Query 203893 CATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCAC 203952 ||| ||||| || |||||||||| ||| ||||| | |||||| || ||||| || Sbjct 123982 CATTCCGGTTTTCAGGCCCTTCTTCCAACCGTAAAAGTGCATCGAGGACAGAACGCCGTA 123923 Query 203953 GTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGAT 204011 | ||| | | ||||| ||||||| | |||||||||||||| ||| ||||| |||| Sbjct 123922 GCTGGCTTTTTCAATGTGGATGTTCAAACTTTGGCTTTGGTCGAT-AAATGCGCCGCGAT 123864 Query 204012 CTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTC 204071 | |||||||||| || ||| || |||||||| ||||||||||||||| | | | Sbjct 123863 CCGCGGCCATATCGAGGATGACTTTTTGCGAAATTTCCCACACCGTCTTGTAGATTGCCT 123804 Query 204072 TGGTGTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCA---GT 204127 | || | ||| | || | || || |||||||||| | ||| || | | Sbjct 123803 TCAAGTCATCAGGGATGTC-GGGGATGTTTTGTATCGAGCCGTGATTGGCTATGACTTGG 123745 Query 204128 CTCATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGG 204187 || || |||| || | |||||| || | ||| ||| | || || | Sbjct 123744 TTCTTCATCGTGTCGT---CCCACAGTCCTCTTTCGGTCAAGTCCTTGAGAAGATGCTGA 123688 Query 204188 TTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGT 204247 |||| | ||||| || |||||||| || | || ||| | | ||| | ||| | || Sbjct 123687 TTGACCACTTGAAACTCCCCGGACAGGACTCTCCGAGTGTAAATGTTACTAGTGTACGGC 123628 Query 204248 TCGAACGC-CTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAG 204306 ||| |||| ||||| || || | || || ||||| ||||||||||| || ||||| Sbjct 123627 TCG-ACGCTTTCGTTATTTCCCAGGATTTGGGCGGTTGAAGCCGTGGGCATTGGGGCCAG 123569 Query 204307 GAGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTG 204366 |||| ||||| | || || | ||| || | ||| | | | ||| || Sbjct 123568 AAGCAACGAGTTTCTTACGCCATGTTTGGCGATTTTCGCCTTTAACGCCGCCCAATCCCA 123509 Query 204367 CATCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGG 204423 || | |||| | || ||||||||||| |||| | ||| |||||||| ||||| Sbjct 123508 CAGATCTGTGGGCATGACATCCCACATGTCGTACTGGAGGATTCCTTGACTCACTGG 123452 >seq7343 Length=933009 Score = 136 bits (150), Expect = 6e-27 Identities = 556/862 (65%), Gaps = 26/862 (3%) Strand=Plus/Minus Query 159629 TTCTTGTATTGCGAC-ACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGA 159687 |||| ||||| || | || ||||| ||||||||||||||||||||||| | |||||| Sbjct 375275 TTCTGGTATT-CGCCGACCTTCTTTTCGAAAAAGTTGGTCTTGCCCTCTGTAGATATTAT 375217 Query 159688 TTCCATGAACCCGAATGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAG 159747 ||| || |||| || || | || | ||| ||| | | ||||| || || Sbjct 375216 CGACATAAAATCGAACGGATTAGTGACATTATAAACCTTTTCACAACCGAGTTCCATTAG 375157 Query 159748 CAACCTGTCTGCCACAAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAG 159807 || | ||| ||||||||||| ||||| ||||| ||| ||||| ||||| | || Sbjct 375156 CAGTCGGTCAGCCACAAATTCTATGTACTGGCACATGAGCTTGCAGTTCATCCCGATAAG 375097 Query 159808 CCTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAAT 159867 ||||| || || || |||||||||||||||| || || | || || || | ||| Sbjct 375096 ACTAACAGGCAGTGCATCCGACAGAAACTCCTGTTCGATAACAACTGCATCTCGAATAAT 375037 Query 159868 CTGCGAGACACGTTCGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGC 159927 || || | ||| | || || || | | | || || | || || Sbjct 375036 GCCCGTCACTCTTTCTTTGGAGGGTTT---TTGAACGAGATAGGAGAATAGTAAACAGGC 374980 Query 159928 AAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGG 159987 |||||| || |||| ||| ||||| | ||||| | || || || | | ||||| || Sbjct 374979 AAAGTCACAATGCAATCCTTCGTCTCTGGAGATCAGTTCATTTGAAAATGTCAGGCCGGG 374920 Query 159988 CATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCC 160047 ||| | || || || ||||| || || | ||||| || ||||| || || Sbjct 374919 CATCAAGCCGCGTTTCTTAAGCCAGAAGATCGAAGCAAAGCTGCCAGAGAAAAATATTCC 374860 Query 160048 CTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGG-CG--TTGGTGTCATGGGT 160104 || || || || || || |||| ||||| ||||| | || || |||| | | | Sbjct 374859 TTCGACAGCTGCGAAAGCGACGATTCTCTCTCCAAATGTGGACGTCTTGGAG---CTGAT 374803 Query 160105 CCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCAC-GGCATGCG-CTCGACGGCGTTA 160162 |||| | ||||| || || ||| | | | ||| || | | | || | |||||| Sbjct 374802 CCACTTAAGCGCCCAGTCCGCTTTCCT--CCTTACACAGGGAAGTGTTTCAATTGCGTTA 374745 Query 160163 AAC---AATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTAC 160219 ||| || || | ||| | ||| |||| || |||||||| | |||| Sbjct 374744 AACAAGAAACTTTTCTGAAC---AGGATCGCTGATGTAGGTCTCAATCAGCATGCTGTAC 374688 Query 160220 ATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGA 160279 ||||| | ||| | |||||||||||| || ||||| |||||| || | |||| | | Sbjct 374687 ATTTCAGAGTGAATATTTTCGATGGCTATTTGAAACCCATAGAAACATCTAGCCT-CGGT 374629 Query 160280 TAC-TGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGC 160338 ||| ||||| ||||| |||| | || | ||||| | || || | || || | || Sbjct 374628 TACTTGCACTTCCTGGCTGAATCGTTCCACAAGATTTTCGTTCACAATGCCATCAGATGC 374569 Query 160339 CGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTC 160398 || || || |||| ||| || || ||||| || || || | || | || ||| | Sbjct 374568 TGCGAAAAAGGCCAGCACATGCGATATGAAGTGCCTTTCATTGTTTGTCAG---CTTATT 374512 Query 160399 CCAGTGTGTCACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGC 160458 ||| || | |||||| | | || || ||||||| | ||||| | || | || Sbjct 374511 CCAATGATCGAGGTCTTGAGATAGGTCCACTTCTTCCGTGGTCCAAAACGAGGCTTCCGC 374452 Query 160459 AGTTTTGTACATGGCCCAGATG 160480 | |||||| | |||||||| Sbjct 374451 TTTCTTGTACTTTTCCCAGATG 374430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795073815865280