Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq7010 149 1e-30 seq5761 145 2e-29 seq7453 143 6e-29 seq6233 143 6e-29 seq1586 143 6e-29 seq6955 132 1e-25 >seq7010 Length=35453 Score = 149 bits (164), Expect = 1e-30 Identities = 163/214 (76%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| || || | ||| || || || ||||| |||| ||||||||| | | || | ||| Sbjct 8691 TCTGAGCACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGATAGGGTACGTCC 8750 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||||| |||||| || |||||||| | ||||||||| || ||| || ||||| Sbjct 8751 ATCTTCCAACTGCTTACCAGCGAAGATCAAACGCTGCTGATCGGGAGGTATGCCTTCCTT 8810 Query 199534 CTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGA 199592 |||||||| ||| || || || ||||| |||||||| || || || || | |||| Sbjct 8811 GTCCTGAAT-TTTCGCTTTTACATTTTCGATGGTGTCTGATGGCTCGACCTCAAGGGTGA 8869 Query 199593 TCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | |||||||| |||||||||||||| |||||||| Sbjct 8870 TGGTCTTACCAGTGAGAGTTTTCACGAAAATTTG 8903 >seq5761 Length=8615 Score = 145 bits (160), Expect = 2e-29 Identities = 162/214 (76%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| || || | || || || || ||||| |||| ||||||||| | | || | ||| Sbjct 314 TCTGAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGATAGGGTACGTCC 255 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||||| |||||| || |||||||| | ||||||||| || ||| || ||||| Sbjct 254 ATCTTCCAACTGCTTACCAGCGAAGATCAAACGCTGCTGATCGGGAGGTATGCCTTCCTT 195 Query 199534 CTCCTGAATCTTTTGCTTC-ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGA 199592 |||||||| ||| |||| || ||||| |||||||| || || || || | |||| Sbjct 194 GTCCTGAAT-TTTCGCTTTTACATTTTCGATGGTGTCTGATGGCTCGACCTCAAGGGTGA 136 Query 199593 TCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | |||||||| |||||||||||||| |||||||| Sbjct 135 TGGTCTTACCAGTGAGAGTTTTCACGAAAATTTG 102 >seq7453 Length=213858 Score = 143 bits (158), Expect = 6e-29 Identities = 151/196 (77%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 199432 AGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCC 199491 ||| |||||||| |||| ||||||||| | |||||| | |||||||||||||||||| || Sbjct 107693 AGTGGACTCCTTCTGGATGTTGTAGTCCGACAAAGTGCGTCCATCTTCCAGCTGCTTGCC 107752 Query 199492 GGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC-T 199550 ||||||||| || ||||||||||| ||| || || ||| ||||| || ||| || | Sbjct 107753 GGCGAAGATCAGCCGCTGCTGGTCGGGAGGGATGCCCTCTTTATCCTGGAT-TTTGGCTT 107811 Query 199551 TCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAG 199610 | || ||||| || |||| || || || || | ||||| ||||| ||||| |||| Sbjct 107812 TAACATTTTCGATAGTATCTGATGGCTCGACCTCAAGAGTGATGGTCTTGCCCGTCAGAG 107871 Query 199611 TTTTCACAAAAATTTG 199626 | ||||| || || || Sbjct 107872 TCTTCACGAAGATCTG 107887 Score = 84.2 bits (92), Expect = 5e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 || ||||||||||| |||||| ||||||||||| | |||||| | || |||||| ||||| Sbjct 107764 CTGATCTTCGCCGGCAAGCAGCTGGAAGATGGACGCACTTTGTCGGACTACAACATCCAG 107705 Query 200995 AAAGAGTCTACTCTTCACCTTGTTTTGAG 201023 || ||||| ||| | || | || ||||| Sbjct 107704 AAGGAGTCCACTTTGCATTTGGTGTTGAG 107676 >seq6233 Length=1575 Score = 143 bits (158), Expect = 6e-29 Identities = 151/196 (77%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 199432 AGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCC 199491 ||| |||||||| |||| ||| ||||| | |||||| | |||||||||||||||||| || Sbjct 611 AGTGGACTCCTTCTGGATGTTATAGTCCGACAAAGTGCGTCCATCTTCCAGCTGCTTGCC 552 Query 199492 GGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC-T 199550 ||||||||| || ||||||||||| ||| || || ||| ||||| || ||| || | Sbjct 551 GGCGAAGATCAGCCGCTGCTGGTCGGGAGGGATGCCCTCTTTGTCCTGGAT-TTTGGCTT 493 Query 199551 TCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAG 199610 | || ||||| ||| |||| || || || || | ||||| ||||| ||||| |||| Sbjct 492 TAACATTTTCGATGGTATCTGATGGCTCGACCTCAAGAGTGATGGTCTTCCCCGTCAGAG 433 Query 199611 TTTTCACAAAAATTTG 199626 | ||||| || || || Sbjct 432 TCTTCACGAAGATCTG 417 >seq1586 Length=2413 Score = 143 bits (158), Expect = 6e-29 Identities = 151/196 (77%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 199432 AGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCC 199491 ||| |||||||| |||| ||| ||||| | |||||| | |||||||||||||||||| || Sbjct 2049 AGTGGACTCCTTCTGGATGTTATAGTCCGACAAAGTGCGTCCATCTTCCAGCTGCTTGCC 1990 Query 199492 GGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC-T 199550 ||||||||| || ||||||||||| ||| || || ||| ||||| || ||| || | Sbjct 1989 GGCGAAGATCAGCCGCTGCTGGTCGGGAGGGATGCCCTCTTTGTCCTGGAT-TTTGGCTT 1931 Query 199551 TCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAG 199610 | || ||||| ||| |||| || || || || | ||||| ||||| ||||| |||| Sbjct 1930 TAACATTTTCGATGGTATCTGATGGCTCGACCTCAAGAGTGATGGTCTTCCCCGTCAGAG 1871 Query 199611 TTTTCACAAAAATTTG 199626 | ||||| || || || Sbjct 1870 TCTTCACGAAGATCTG 1855 >seq6955 Length=469295 Score = 132 bits (146), Expect = 1e-25 Identities = 150/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 ||| ||||| ||||| || |||| ||||||||| | | ||| | ||||||||||| || Sbjct 94387 GTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCGGAAAGAGTGCGTCCATCTTCCAATTG 94328 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 |||||| ||||| ||||||||||||||||| || ||||||||| ||||| || || Sbjct 94327 CTTTCCAGCGAAAATGAGACGCTGCTGGTCTGGGGGGATTCCTTCTTTGTCCTGGATTTT 94268 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 ||| || |||| ||||||| | ||| || ||||| ||||| || || || || Sbjct 94267 AGCCTTAACATTCTCGATTGTGTCTGAAGGTTCCACTTCCAAAGTGATGGTTTTTCCAGT 94208 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 | |||||||| || || || Sbjct 94207 TAATGTTTTCACGAAGATCTG 94187 Score = 131 bits (144), Expect = 4e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 || || || || | ||| || || || |||||||||| ||||||||| | | || | Sbjct 95541 AGCCTGAGCACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGTGTGCGG 95482 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 ||||| |||| ||||||||| || |||||||||||||||||||| || || ||||| Sbjct 95481 CCATCCTCCAACTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCCTTCC 95422 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 || || ||||| || ||| ||||| ||| |||| | ||| || ||||| ||| Sbjct 95421 TTGTCTTGGATCTTAGCTTTAACGTTTTCGATGGTATCTGAGGCTTCCACTTCCAAAGTG 95362 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || ||||| ||||| ||||| Sbjct 95361 ATGGTTTTTCCAGTCAGGGTTTTAACAAAGATTTG 95327 Score = 127 bits (140), Expect = 5e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| || | || | ||| ||||||||||| | ||||||||||| ||||| | ||| Sbjct 95083 TCTCAACACCAAATGCAAAGTGGACTCCTTTTGAATGTTGTAGTCAGATAAAGTGCGTCC 95024 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 ||| |||| ||||||||| || ||||| | | ||||||||| || ||| ||||| Sbjct 95023 ATCCTCCAACTGCTTTCCTGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCTTCCTT 94964 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || || ||||| ||| ||| || | ||||||| | ||| || ||||| || || Sbjct 94963 GTCTTGGATCTTCGCCTTAACGTTCTCAATTGTGTCTGAGGGTTCCACTTCCAAAGTAAT 94904 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || | ||||||||| || ||||| Sbjct 94903 CGTTTTGCCGGTTAAAGTTTTCACGAAGATTTG 94871 Score = 113 bits (124), Expect = 1e-19 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 ||||||| || | || | ||| || || || |||| ||||||||||| ||| || | | Sbjct 94857 AGTCTCAAAACCAAATGTAAAGTGGATTCTTTCTGGATGTTGTAGTCAGACAATGTACGT 94798 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 |||||||| | ||| || ||||| || || | | ||| ||||| ||| ||||||||| Sbjct 94797 CCATCTTCTAACTGTTTGCCGGCAAAAATTAACCTCTGTTGGTCTGGAGGAATTCCTTCC 94738 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 ||||||||||| || || ||| | ||| || | || ||| || || | || Sbjct 94737 TTGTCCTGAATCTTGGCTTTAACATTTTCAATGGTATCAGATGGTTCGACTTCAAGTGTA 94678 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || ||||| ||||||||||| Sbjct 94677 ATTGTTTTGCCAGTAAGGGTTTTTACAAAAATTTG 94643 Score = 107 bits (118), Expect = 5e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 199415 CTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCA 199474 || || || | ||| ||||| || ||||| |||| |||||| |||| |||||| | || Sbjct 95310 CTGAGCACCAAGTGAAGAGTGGATTCCTTCTGGATGTTGTAATCAGACAAAGTTCGGCCG 95251 Query 199475 TCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGC 199534 ||||||| || ||||| ||||| || || | ||| ||||| || |||||||||| Sbjct 95250 TCTTCCAATTGTTTTCCTGCGAAAATCAGTCTCTGTTGGTCTGGGGGAATTCCTTCTTTG 95191 Query 199535 TCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATC 199594 ||||| ||||| || || ||| | || || | | || || || | || || Sbjct 95190 TCCTGGATCTTGGCTTTAACATTTTCAATAGTATCAGAAGGCTCGACTTCAAGTGTAATG 95131 Query 199595 GTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || |||||||| ||||||||||| Sbjct 95130 GTTTTTCCAGTAAGAGTTTTGACAAAAATTTG 95099 Score = 98.7 bits (108), Expect = 2e-15 Identities = 74/87 (85%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 || || ||||| |||||||| |||||||||||| | ||| | |||| |||||| ||||| Sbjct 94310 CTCATTTTCGCTGGAAAGCAATTGGAAGATGGACGCACTCTTTCCGACTACAACATCCAG 94369 Query 200995 AAAGAGTCTACTCTTCACCTTGTTTTG 201021 |||||||||||||||||| | |||||| Sbjct 94370 AAAGAGTCTACTCTTCACTTGGTTTTG 94396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178797920808596