Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_015269.1 Length=118351 Score E Sequences producing significant alignments: (Bits) Value seq2768 233 1e-56 >seq2768 Length=8677 Score = 233 bits (258), Expect = 1e-56 Identities = 342/484 (71%), Gaps = 0/484 (0%) Strand=Plus/Minus Query 45956 ACTGATCCTCATAGATATGAAGATTGATAATCTTCTGGCGTGCAATTCCTGGTTTAAGGC 46015 ||||||||||||| ||||| ||| | |||||| || || |||| | ||| | | Sbjct 1788 ACTGATCCTCATAAATATGCGCATTCACAATCTTGTGATAAGCCTTTCCAGCCTTATGTC 1729 Query 46016 CTGTAATCTGAGCCATTAATGCTAGAAGCGTATAGCACTGAACCATGTTAAATACTTGGC 46075 ||||||| |||||||| | |||| || ||| | ||||| |||||| ||||| Sbjct 1728 CTGTAATTTGAGCCATCAGAGCTAACAGAGTAAAAACCTGAATTTGGTTAAAATTTTGGC 1669 Query 46076 CTAACAGGAAGTCATTAGATCTCTGGAAAGAGTTCAGGTATAATGTATCTCCCAAAATAG 46135 | || | | ||| || | || | || | | ||| | |||||| || | | || Sbjct 1668 CCAAAGGTACATCACACGAACGTTGTGATGATGTTAAGTAAAGTGTATCCCCTACCAAAG 1609 Query 46136 AGAACTGATGAGTGTGCATACATGGACGTAAGCAACCCTTTGAGAACTCTCCCGGATTCC 46195 |||| |||||| |||||||| || |||| ||||||| | ||||| || || || Sbjct 1608 AGAAGGTATGAGTATGCATACAAGGTCGTAGGCAACCCATATCAAACTCCCCTGGGTTAT 1549 Query 46196 AGAAGGTTAGAATTTCCCCACGATCATCAATGCCCTTTTTCAGATTATGATAAATCTTGG 46255 |||| || |||||||| |||||||||||||| || ||| | | || ||| ||||| Sbjct 1548 AGAAAGTCAGAATTTCACCACGATCATCAATACCTTTTCGTAAGTCATCATAGATCTTAC 1489 Query 46256 CTAGTTGGTCAAACATAAGACCATCGGAATTAGTCCACTGACGTCCTTGAACACCATAGA 46315 || ||||||||| ||| || || ||| ||| || || ||||| || || || | Sbjct 1488 GAAGCTGGTCAAACTCTTTACCTTCAGAGTTACGCCAATGGCGCCCTTGGACTCCGTATA 1429 Query 46316 CTCGTCCCATATCATCCTCACCTTTACGGTATGGATTGTCTAGCCAAGCTGAGTTTTCAT 46375 |||| ||||||||||| ||||||||||| || || || ||| ||||||| ||||| | Sbjct 1428 CTCGCCCCATATCATCTTCACCTTTACGATAAGGGTTAGCTAACCAAGCTCCATTTTCGT 1369 Query 46376 TTGCATTAGCATTCCATGTGTTAACACCAATAGCGCGGAATTGTGCTGCTGAGTCATACC 46435 | ||||| |||||||| || ||| ||||| || ||||| || || || |||||| | Sbjct 1368 TAGCATTTGCATTCCAAGTATTACAGCCAATGGCTCGGAACTGAGCAGCATTGTCATATC 1309 Query 46436 CACG 46439 |||| Sbjct 1308 CACG 1305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378560619192416