Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq6955 167 5e-36 >seq6955 Length=469295 Score = 167 bits (184), Expect = 5e-36 Identities = 167/217 (77%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 194925 TCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCC 194984 |||||| || | || | ||||||||| |||||||| ||||| || | | ||| | || Sbjct 95083 TCTCAACACCAAATGCAAAGTGGACTCCTTTTGAATGTTGTAGTCAGATAAAGTGCGTCC 95024 Query 194985 ATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTT 195044 ||| || | |||||| ||||| ||||| | || || |||||||| ||||||||||| || Sbjct 95023 ATCCTCCAACTGCTTTCCTGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCTTCCTT 94964 Query 195045 GTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAAC 195104 |||||| || || ||| ||||||||||| ||||| || ||||||||| | |||| Sbjct 94963 GTCTTGGATCTTCGCCTTAACGTTCTCAATTGTGTCTGAGGGTTCCACTTCCAAAGTAAT 94904 Query 195105 CGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||| || || || |||||||| ||||| | ||||||| Sbjct 94903 CGTTTTGCCGGTTAAAGTTTTCACGAAGATTTGCATT 94867 Score = 161 bits (178), Expect = 2e-34 Identities = 169/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || | |||||| | ||||||||| |||||||| || || ||||| |||| |||||| Sbjct 94405 TCTCAGCCGCAAAACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCGGAAAGAGT 94346 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| | ||||| || ||||| || || || || |||||||| || || || Sbjct 94345 GCGTCCATCTTCCAATTGCTTTCCAGCGAAAATGAGACGCTGCTGGTCTGGGGGGATTCC 94286 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||||||||| || ||||| ||| || ||||| || ||||| ||| ||||||||| | Sbjct 94285 TTCTTTGTCCTGGATTTTAGCCTTAACATTCTCGATTGTGTCTGAAGGTTCCACTTCCAA 94226 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | || ||||| || || ||||| ||||| | ||||| Sbjct 94225 AGTGATGGTTTTTCCAGTTAATGTTTTCACGAAGATCTGCAT 94184 Score = 158 bits (174), Expect = 3e-33 Identities = 168/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | |||||| || | || |||||||| |||||||| || || ||||| | || || Sbjct 94633 TCTCAATCTCAACACCAAATGCAGAGTGGATTCTTTTTGGATGTTATAATCTGATAGGGT 94574 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| | ||| || || ||||| || | ||||||||||||||| ||||| || Sbjct 94573 GCGGCCATCTTCCAACTGTTTGCCAGCGAAAATCAATCGTTGTTGGTCTGGGGGAATTCC 94514 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| ||||||||||| || || ||||||||||| ||||| || ||| || ||||| Sbjct 94513 TTCCTTGTCTTGAATCTTGGCTTTAACGTTCTCAATAGTGTCTGATGGTTCAACCTCAAG 94454 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | || || || |||||||| || ||||| | ||||| Sbjct 94453 TGTGATAGTTTTGCCAGTCAAAGTCTTCACGAAAATCTGCAT 94412 Score = 140 bits (154), Expect = 7e-28 Identities = 154/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||||||||| || || || || |||||||| | | ||||| || ||||| | || Sbjct 95299 GTGAAGAGTGGATTCCTTCTGGATGTTGTAATCAGACAAAGTTCGGCCGTCTTCCAATTG 95240 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || |||||||| || |||| ||||||||||| ||||| ||||||||||| || || || Sbjct 95239 TTTTCCTGCGAAAATCAGTCTCTGTTGGTCTGGGGGAATTCCTTCTTTGTCCTGGATCTT 95180 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 || || || ||||| || || ||| || |||||||| |||| || ||||| || Sbjct 95179 GGCTTTAACATTTTCAATAGTATCAGAAGGCTCGACTTCAAGTGTAATGGTTTTTCCAGT 95120 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 | |||||| || || | ||||||| Sbjct 95119 AAGAGTTTTGACAAAAATTTGCATT 95095 Score = 138 bits (152), Expect = 3e-27 Identities = 150/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 |||||| |||||||| || || ||||| | || || | |||||||| | || || || Sbjct 95977 AGTGGATTCTTTTTGGATGTTATAATCTGATAGGGTGCGGCCATCTTCCAATTGTTTGCC 95918 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 |||||| || |||| ||||||||||||||||| ||||| ||||| || || ||| ||| Sbjct 95917 TGCGAAAATCAGTCTCTGTTGGTCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTGCCTT 95858 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 || || || ||||| || || ||| |||||||| |||| || || || |||| ||| Sbjct 95857 AACATTTTCGATGGTATCAGATGGTTCGACTTCAAGTGTAATAGTTTTGCCAGTCAGAGT 95798 Query 195123 TTTTACGAACACTTGCATT 195141 ||| || || | |||||| Sbjct 95797 TTTAACAAAAATCTGCATT 95779 Score = 136 bits (150), Expect = 9e-27 Identities = 153/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||||||||| || || || || |||||||| | | ||| | || ||||| | || Sbjct 95755 GTGAAGAGTGGATTCCTTCTGTATGTTGTAATCCGATAAAGTGCGGCCGTCTTCCAATTG 95696 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || |||||||| || | | || |||||||||||||||||||||||||| || || || Sbjct 95695 TTTGCCTGCGAAAATCAACCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCCTGGATCTT 95636 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 || || ||||| |||||||| || ||||||||| | || | || ||||| || Sbjct 95635 AGCTTTAACATTCTCGATGGTGTCTGAGGGTTCCACTTCCAAAGTGATAGTTTTTCCAGT 95576 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 || ||||| ||||| | ||||||| Sbjct 95575 CAGGGTTTTCACGAAAATTTGCATT 95551 Score = 132 bits (146), Expect = 1e-25 Identities = 163/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| ||||||||||| | || | |||||| ||||| || || ||||| || | | || Sbjct 94861 TCTCAGTCTCAAAACCAAATGTAAAGTGGATTCTTTCTGGATGTTGTAGTCAGACAATGT 94802 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| | ||| || || || || || | | ||||||||||||||||| || Sbjct 94801 ACGTCCATCTTCTAACTGTTTGCCGGCAAAAATTAACCTCTGTTGGTCTGGAGGAATTCC 94742 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| ||||| ||||| || || || || |||||||| || || ||| |||||||| Sbjct 94741 TTCCTTGTCCTGAATCTTGGCTTTAACATTTTCAATGGTATCAGATGGTTCGACTTCAAG 94682 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 |||| || || || || | |||||||| || | ||||||| Sbjct 94681 TGTAATTGTTTTGCCAGTAAGGGTTTTTACAAAAATTTGCATT 94639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109365205672196