Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq7343 304 1e-77 seq7149 82.4 9e-11 >seq7343 Length=933009 Score = 304 bits (336), Expect = 1e-77 Identities = 606/890 (68%), Gaps = 12/890 (1%) Strand=Plus/Minus Query 18661 ACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAAT 18720 || || | ||| || |||||| | || | ||||| || || || || || |||||| Sbjct 375284 ACACCTACTTTCTGGTATTCGCCGACCTTCTTTTCGAAAAAGTTGGTCTTGCCCTCTGTA 375225 Query 18721 GATATACATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAAT 18780 ||||| ||||||||| || ||||| | |||||||| | |||| | || | | Sbjct 375224 GATATTATCGACATAAAATCGAACGGATTAGTGACATTATAAACCTTTTCACAACCGAGT 375165 Query 18781 TCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATT 18840 || | ||| |||| || || ||||||| || || | ||| | | || ||||| Sbjct 375164 TCCATTAGCAGTCGGTCAGCCACAAATTCTATGTACTGGCACATGAGCTTGCAGTTCATC 375105 Query 18841 CCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCT 18900 || || | ||||||| |||||||| | ||||| || ||||| ||| ||||| ||| Sbjct 375104 CCGATAAGACTAACAGGCAGTGCATCCGACAGAAACTCCTGTTCGATAACAACTGCATCT 375045 Query 18901 GATATAATAGATACAACTCTATCTTCATTAGGAGGGTATA-GAA---GATGTTTAAACAT 18956 ||||| ||||| |||| ||||||| | ||| ||| || | Sbjct 375044 CGAATAATGCCCGTCACTCTTTCTTT----GGAGGGTTTTTGAACGAGATAGGAGAATAG 374989 Query 18957 CAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGT 19016 ||||| ||||| |||||||| | ||| |||||||| |||| |||||| |||||||| Sbjct 374988 TAAACAGGCAAAGTCACAATGCAATCCTTCGTCTCTGGAGATCAGTTCATTTGAAAATGT 374929 Query 19017 TAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAA 19076 | || ||||||| || | ||| || | |||||| || |||||||| ||||| || Sbjct 374928 CAGGCCGGGCATCAAGCCGCGTTTCTTAAGCCAGAAGATCGAAGCAAAGCTGCCAGAGAA 374869 Query 19077 GAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAG-CATCATTAT 19135 ||||| ||||| || ||||| ||||| || | ||| |||||| | | | | || | Sbjct 374868 AAATATTCCTTCGACAGCTGCGAAAGCGACGATTCTCTCTCCAAATGTGGACGTCTTGGA 374809 Query 19136 TATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAG 19195 ||| |||| || || ||||| || || ||| | ||||||| || | ||| || || | Sbjct 374808 GCTGA-TCCACTTAAGCGCCCAGTCCGCTTTCCTCCTTACACAGGGAAGTGTTTCAATTG 374750 Query 19196 AATTAAATA-GATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTG 19254 ||||| | || || | || | | | ||| | | || | || |||| | ||| Sbjct 374749 CGTTAAACAAGAAACTTTT-CTGAACAGGATCGCTGATGTAGGTCTCAATCAGCATGCTG 374691 Query 19255 TACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCT 19314 |||||||| || ||||||||||| || || || ||||| || || |||||||| || || Sbjct 374690 TACATTTCAGAGTGAATATTTTCGATGGCTATTTGAAACCCATAGAAACATCTAGCCTCG 374631 Query 19315 GTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTA 19374 |||| || ||||| | |||| ||| || | |||||| || || || |||||| Sbjct 374630 GTTACTTGCACTTCCTGGCTGAATCGTTCCACAAGATTTTCGTTCACAATGCCATCAGAT 374571 Query 19375 GCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTC 19434 ||||| ||||| || | ||||| || || || |||||| || | ||||| Sbjct 374570 GCTGCGAAAAAGGCCAGCACATGCGATATGAAGTGCCTTTCATTGTTTGTCAGCTTATTC 374511 Query 19435 CAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCT 19494 |||| || | |||| ||||| || |||||||| |||||||| || || || ||| Sbjct 374510 CAATGATCGAGGTCTTGAGATAGGTCCACTTCTTCCGTGGTCCAAAACGAGGCTTCCGCT 374451 Query 19495 TTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 || || ||| | | ||| || || ||||||| || || || || ||||| Sbjct 374450 TTCTTGTACTTTTCCCAGATGTCTGGATATTGAATGGGGAAGATGACAAA 374401 >seq7149 Length=218332 Score = 82.4 bits (90), Expect = 9e-11 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 48642 TTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCT 48701 |||||||| | || || || ||||| || | ||||| ||||| | ||| || || Sbjct 122131 TTCTCTGACATGAAGTTGTAGGTTTCGATTGCTGAATCAATATCTTCTCCATGGATGCCC 122072 Query 48702 ATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAA 48761 | || || | ||| ||||| | || || ||||||||||| || || || |||| | Sbjct 122071 ACTGAGACCCTCATCAACATGTGCTGCGGCCTTTCAACAATCTTTCCGTTGATCTTCAGA 122012 Query 48762 AGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 48811 ||||| || | |||| ||||| || ||||| |||||||| || || || Sbjct 122011 AGATACGACCTCTCCAGGGTTTTGAATCCAAAGTAGTTGTACGAGAAATC 121962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562051268164320