Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_016762.1 Length=49135 Score E Sequences producing significant alignments: (Bits) Value seq3022 91.5 5e-14 seq3021 91.5 5e-14 seq3023 89.7 2e-13 >seq3022 Length=1446 Score = 91.5 bits (100), Expect = 5e-14 Identities = 56/60 (93%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 47536 ACAGGATTTAGGTTCCAGCGCCGCAAGGCGTGAGAGTTCGAGTCTCTCCGTCCGCACCAT 47595 || ||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||| Sbjct 28 ACTGGATTTAGGTTCCAGCGCCGCGAGGTGTGAGAGTTCGAGTCTCTCCGTCCCCACCAT 87 >seq3021 Length=1014 Score = 91.5 bits (100), Expect = 5e-14 Identities = 56/60 (93%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 47536 ACAGGATTTAGGTTCCAGCGCCGCAAGGCGTGAGAGTTCGAGTCTCTCCGTCCGCACCAT 47595 || ||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||| Sbjct 28 ACTGGATTTAGGTTCCAGCGCCGCGAGGTGTGAGAGTTCGAGTCTCTCCGTCCCCACCAT 87 Score = 89.7 bits (98), Expect = 2e-13 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 47536 ACAGGATTTAGGTTCCAGCGCCGCAAGGCGTGAGAGTTCGAGTCTCTCCGTCCGCACCA 47594 || ||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||| Sbjct 956 ACTGGATTTAGGTTCCAGCGCCGCGAGGTGTGAGAGTTCGAGTCTCTCCGTCCCCACCA 1014 >seq3023 Length=6550 Score = 89.7 bits (98), Expect = 2e-13 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 47536 ACAGGATTTAGGTTCCAGCGCCGCAAGGCGTGAGAGTTCGAGTCTCTCCGTCCGCACCA 47594 || ||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||| Sbjct 59 ACTGGATTTAGGTTCCAGCGCCGCGAGGTGTGAGAGTTCGAGTCTCTCCGTCCCCACCA 1 Score = 89.7 bits (98), Expect = 2e-13 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 47536 ACAGGATTTAGGTTCCAGCGCCGCAAGGCGTGAGAGTTCGAGTCTCTCCGTCCGCACCA 47594 || ||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||| Sbjct 292 ACTGGATTTAGGTTCCAGCGCCGCGAGGTGTGAGAGTTCGAGTCTCTCCGTCCCCACCA 234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157095123763032