Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq7343 219 5e-52 >seq7343 Length=933009 Score = 219 bits (242), Expect = 5e-52 Identities = 554/832 (67%), Gaps = 18/832 (2%) Strand=Plus/Minus Query 36874 TAACTCCCATTTTTTGATATTCTCCAACTCGTCTTT-CGAAAAAATTTGTCTTTCCTTCT 36932 |||| || | ||| || ||||| || || | ||||| ||||||| || ||||| || ||| Sbjct 375286 TAACACCTACTTTCTGGTATTCGCCGAC-CTTCTTTTCGAAAAAGTTGGTCTTGCCCTCT 375228 Query 36933 AGTGATATATTTTC--CATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATG 36990 || | ||||| || ||||||||| || ||||||| |||||| | | ||| Sbjct 375227 -GT-AGATATTATCGACATAAAATCGAACGGATTAGTGACATTATAAACCTTTTCACAAC 375170 Query 36991 ATAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGT 37050 | |||| | || || | || || |||||||||||||| | ||||| || | ||| Sbjct 375169 CGAGTTCCATTAGCAGTCGGTCAGCCACAAATTCTATGTACTGGCACATGAGCTTGCAGT 375110 Query 37051 TTATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAG 37110 | || || || || | || || | |||||| ||||| | ||| || | || | Sbjct 375109 TCATCCCGATAAGACTAACAGGCAGTGCATCCGACAGAAACTCCTGTTCGATAACAACTG 375050 Query 37111 CATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTA---- 37166 ||||| || || | | | ||| ||| |||| || | ||| || | || Sbjct 375049 CATCTCGAA---TAATGCCCGTCACTCTTTCT-TTGGAGGGTTTTTGAACGAGATAGGAG 374994 Query 37167 AACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAA 37226 || | |||||| ||||| |||||||| || ||||| ||||| |||| |||||| ||| Sbjct 374993 AATAGTAAACAGGCAAAGTCACAATGCAATCCTTCGTCTCTGGAGATCAGTTCATTTGAA 374934 Query 37227 AAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCA 37286 || || | || ||||| || || | ||| |||| ||| || || | ||||| ||| Sbjct 374933 AATGTCAGGCCGGGCATCAAGCCGCGTTTCTTAAGCCAGAAGATCGAAGCAAAGCTGCCA 374874 Query 37287 GAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTA 37346 || || || || ||||| || ||||| || || || | | || || || || | Sbjct 374873 GAGAAAAATATTCCTTCGACAGCTGCGAAAGCGACGATTCTCTCTCCAAATGTGGACGTC 374814 Query 37347 TA--ATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTT 37404 | | | || |||| || | ||| || || || | ||||| || ||||| Sbjct 374813 TTGGAGCTGA--TCCACTTAAGCGCCCAGTCCGCTTTCCTCCTTACACAGGGAAGTGTTT 374756 Query 37405 CAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTA 37464 ||||||| || || | || |||| | || ||| | || || || ||||| || | Sbjct 374755 CAATTGCGTTAAACAAGAAACTTTTCTGAACAGGATCGCTGATGTAGGTCTCAATCAGCA 374696 Query 37465 AACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAG 37524 || ||||||||||||||||||||||| || ||||| ||||| ||||| ||||| |||| Sbjct 374695 TGCTGTACATTTCAGAGTGAATATTTTCGATGGCTATTTGAAACCCATAGAAACATCTAG 374636 Query 37525 CTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCAT 37584 | || | || ||| || || | || | | | | ||||| || || || |||| Sbjct 374635 CCTCGGTTACTTGCACTTCCTGGCTGAATCGTTCCACAAGATTTTCGTTCACAATGCCAT 374576 Query 37585 CACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATT 37644 || ||||| || || || || |||| ||| || || ||||||| |||| | | Sbjct 374575 CAGATGCTGCGAAAAAGGCCAGCACATGCGATATGAAGTGCCTTTCATTGTTTGTCAGCT 374516 Query 37645 TTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAA 37696 | ||||||| || | |||| |||| || ||||| || ||||||||| Sbjct 374515 TATTCCAATGATCGAGGTCTTGAGATAGGTCCACTTCTTCCGTGGTCCAAAA 374464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592256176375520