Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_017969.1 Length=108853 Score E Sequences producing significant alignments: (Bits) Value seq2768 223 2e-53 >seq2768 Length=8677 Score = 223 bits (246), Expect = 2e-53 Identities = 341/486 (70%), Gaps = 0/486 (0%) Strand=Plus/Minus Query 45003 ACTGATCCTCATAGATATGAAGATTGATAATCTTCTGGCGTGCAATTCCTGGTTTAAGGC 45062 ||||||||||||| ||||| ||| | |||||| || || |||| | ||| | | Sbjct 1788 ACTGATCCTCATAAATATGCGCATTCACAATCTTGTGATAAGCCTTTCCAGCCTTATGTC 1729 Query 45063 CTGTAATCTGTGCCATTAATGCTAGAAGCGTATAGCACTGAACCATGTTAAATACTTGGC 45122 ||||||| || ||||| | |||| || ||| | ||||| |||||| ||||| Sbjct 1728 CTGTAATTTGAGCCATCAGAGCTAACAGAGTAAAAACCTGAATTTGGTTAAAATTTTGGC 1669 Query 45123 CTAACAGGAAGTCATTAGATCTCTGAAAAGAGTTCAGGTATAATGTATCTCCCAAAATAG 45182 | || | | ||| || | || | || | | ||| | |||||| || | | || Sbjct 1668 CCAAAGGTACATCACACGAACGTTGTGATGATGTTAAGTAAAGTGTATCCCCTACCAAAG 1609 Query 45183 AGAACTGATGAGTGTGCATACATGGACGTAAGCAACCTTTCGAGAACTCTCCAGGATTCC 45242 |||| |||||| |||||||| || |||| |||||| | ||||| || || || Sbjct 1608 AGAAGGTATGAGTATGCATACAAGGTCGTAGGCAACCCATATCAAACTCCCCTGGGTTAT 1549 Query 45243 AGAAGGTTAGAATTTCCCCACGATCATCAATGCCCTTCTTCAGGTTATGATAAATCTTGG 45302 |||| || |||||||| |||||||||||||| || || | || || ||| ||||| Sbjct 1548 AGAAAGTCAGAATTTCACCACGATCATCAATACCTTTTCGTAAGTCATCATAGATCTTAC 1489 Query 45303 CTAGTTGGTCAAACATAAGACCATCGGAATTAGTCCACTGACGTCCTTGAACACCATAGA 45362 || ||||||||| ||| || || ||| ||| || || ||||| || || || | Sbjct 1488 GAAGCTGGTCAAACTCTTTACCTTCAGAGTTACGCCAATGGCGCCCTTGGACTCCGTATA 1429 Query 45363 CTCGTCCCATATCATCCTCACCTTTGCGATATGGATTGTCTAGCCAAGCTAAGTTTTCAT 45422 |||| ||||||||||| |||||||| ||||| || || ||| ||||||| ||||| | Sbjct 1428 CTCGCCCCATATCATCTTCACCTTTACGATAAGGGTTAGCTAACCAAGCTCCATTTTCGT 1369 Query 45423 TTGCATTAGCATTCCATGTGTTAACACCAATAGCGCGGAATTGTGCTGCTGAATCATACC 45482 | ||||| |||||||| || ||| ||||| || ||||| || || || ||||| | Sbjct 1368 TAGCATTTGCATTCCAAGTATTACAGCCAATGGCTCGGAACTGAGCAGCATTGTCATATC 1309 Query 45483 CACGCA 45488 |||||| Sbjct 1308 CACGCA 1303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348170052207752