Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_017972.1 Length=280538 Score E Sequences producing significant alignments: (Bits) Value seq2994 111 3e-19 >seq2994 Length=7505 Score = 111 bits (122), Expect = 3e-19 Identities = 137/183 (75%), Gaps = 6/183 (3%) Strand=Plus/Minus Query 22968 TTCGCACTCTTCATCAGATTCAAAGAACAGAATTTGTGCGCAACCTTCGCCAGCGTAGAT 23027 ||| || |||||||||||||||| || || ||||| || ||| || || || || || Sbjct 4432 TTCACAGACTTCATCAGATTCAAAAAATAGCATTTGCGCCACACCCTCACCTGCATAAAT 4373 Query 23028 CAGTGCCGG--GCTTGGTGTGGTATTGGAAAACTCCAGAGTAAGCGAG-CCTTTCCATTC 23084 | || || | ||||| ||||| |||||||| | ||| | || | |||| ||| || Sbjct 4372 ACGCGCAGGAAGATTGGTC--GTATTTGAAAACTCTAAAGTGA-CGTGTCCTTCCCACTC 4316 Query 23085 TGGTTCCAGCGGCGTGACGTTTACGATGATGCCGCAACGCGCATACGTCGATTTGCCGAG 23144 ||| || |||||||| ||||| || |||||||| ||||||||||| || || || || | Sbjct 4315 TGGCTCAAGCGGCGTCACGTTGACAATGATGCCACAACGCGCATAAGTTGACTTACCCAA 4256 Query 23145 GCA 23147 ||| Sbjct 4255 GCA 4253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 897501731295040