Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_017984.1 Length=46387 Score E Sequences producing significant alignments: (Bits) Value seq8067 149 2e-31 seq4971 86.0 2e-12 seq1920 86.0 2e-12 >seq8067 Length=1101 Score = 149 bits (164), Expect = 2e-31 Identities = 254/364 (70%), Gaps = 6/364 (2%) Strand=Plus/Plus Query 31943 GCATATGATGATGGTGTTGGCGTGTGGACTATCGGCATAGGTACAACCATCTACCCAAAT 32002 || |||||||||||||| || || |||||||| || || || || | ||||||||| Sbjct 256 GCCTATGATGATGGTGTAGGTGTATGGACTATTGGTTATGGCACCACAAAATACCCAAAT 315 Query 32003 GGTACAAAAGTTAAGAAAGGCGATACATGTACATCTGAACAAGCAAAAACCTACTTCAAA 32062 || | | || || ||||| ||||| || ||| || || || ||| | || | | Sbjct 316 GGCATACGTGTCAAAAAAGGGGATACCTGCACACTGGATCAGGCCAAAGCTTATATGCAG 375 Query 32063 CATGATTTAGTTAAG--TTTGAAAATGTTGTAAATGAATCCGTTAAAGTTCCACTTAGTC 32120 | || || ||| ||||| | ||||||| | || ||||||||| | |||| Sbjct 376 AACGACCTA--AAAGCATTTGAGCAGACTGTAAATAGTGCAGTCAAAGTTCCAGTCAGTC 433 Query 32121 AGAATCAATTTGATGCTCTAGTGTCACTGACCTACAACATCGGCTCAGGTGCTTTTAAAA 32180 | ||||| || ||||| ||||| |||||| |||||||||| || ||| ||| || |||| Sbjct 434 AAAATCAGTTCGATGCCCTAGTTTCACTGGCCTACAACATTGGATCAACTGCATTCAAAA 493 Query 32181 ATTCAACTTTACTCAAGCTTCTTAACAATGGCGATTATCAAGGTGCTGCCGATCAATTCC 32240 |||| ||||| |||| | | || | || ||||| ||| ||| ||| |||| || Sbjct 494 ATTCCACTTTGGTCAAACGATTGAATGAAGGAAATTATAAAGCTGCAGCCAATCAGTTTG 553 Query 32241 CAGCATGGAAAAAAGCTGGTGGTCGAGTTCTTG-AAGGTTTAGTTAAGCGCCGTGCTGCT 32299 | |||| || || ||||| | || | || ||||| | || || ||||| |||||| Sbjct 554 ATGTATGGGTGAATGCCGGTGG-CAAGCGCATGCAAGGTCTGGTCAATCGCCGGGCTGCT 612 Query 32300 GAAA 32303 |||| Sbjct 613 GAAA 616 >seq4971 Length=6473 Score = 86.0 bits (94), Expect = 2e-12 Identities = 172/255 (67%), Gaps = 0/255 (0%) Strand=Plus/Minus Query 31942 TGCATATGATGATGGTGTTGGCGTGTGGACTATCGGCATAGGTACAACCATCTACCCAAA 32001 ||| || |||||||| || || || ||||| || || || || || | |||||||| Sbjct 5654 TGCCTACGATGATGGCGTGGGTGTATGGACCATTGGTTATGGCACCACAAAATACCCAAA 5595 Query 32002 TGGTACAAAAGTTAAGAAAGGCGATACATGTACATCTGAACAAGCAAAAACCTACTTCAA 32061 ||||| || || ||||| ||||| || ||| || ||||| |||| |||| | | Sbjct 5594 TGGTATTCGTGTCAAAAAAGGGGATACCTGCACACTGGAGCAAGCCAAAAGCTACATGCA 5535 Query 32062 ACATGATTTAGTTAAGTTTGAAAATGTTGTAAATGAATCCGTTAAAGTTCCACTTAGTCA 32121 |||||| || || || || | || ||| | || || ||||| | | ||| Sbjct 5534 ACATGACTTGAAAAAATTCGAGCAAACCGTCAATAGCGCAGTCAATGTTCCGATCAATCA 5475 Query 32122 GAATCAATTTGATGCTCTAGTGTCACTGACCTACAACATCGGCTCAGGTGCTTTTAAAAA 32181 |||||| |||||||| | || ||| || |||| ||||| || | || ||| || | Sbjct 5474 GAATCAGTTTGATGCCTTGGTTTCATTGGCCTATAACATTGGACCTACCGCATTTGAAGA 5415 Query 32182 TTCAACTTTACTCAA 32196 || ||||| |||| Sbjct 5414 ATCCACTTTGGTCAA 5400 >seq1920 Length=8530 Score = 86.0 bits (94), Expect = 2e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 39631 CAATGGTTTATCGACAAAGGCTATGGTGAGCTAAAGAAAACTGATAATGGCTACAACCAG 39690 |||||||||||||||||||| ||||| || | ||| | || || | |||||| || Sbjct 2312 CAATGGTTTATCGACAAAGGTTATGGCGAAGTCAAGCAGACAGAACAAGGCTACCCACAA 2253 Query 39691 TCAAAATTTACCAATAAAGGCGAACAATGGGT 39722 || ||||| ||||||||||||||||| ||||| Sbjct 2252 TCCAAATTCACCAATAAAGGCGAACAGTGGGT 2221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148302378786744