Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_018087.3 Length=166687 Score E Sequences producing significant alignments: (Bits) Value seq8067 129 6e-25 seq1760 98.7 1e-15 >seq8067 Length=1101 Score = 129 bits (142), Expect = 6e-25 Identities = 240/350 (69%), Gaps = 2/350 (1%) Strand=Plus/Minus Query 11067 CCATACTTCAAATTGTTCTGCTGCGCCTTTATAATCGCCAGCATTCAATTTTCTCAATAA 11126 |||||| ||||| || | ||||| ||||||||| || |||||||| | | | || Sbjct 561 CCATACATCAAACTGATTGGCTGCAGCTTTATAATTTCCTTCATTCAATCGTTTGACCAA 502 Query 11127 AGTTGAATTCGCAAATGCCGTTTCGCCAATATTGTACATTAATGAAACTAAAGCATCAAA 11186 ||| ||||| ||||| ||| ||||| ||||| | |||||||| ||||| || Sbjct 501 AGTGGAATTTTTGAATGCAGTTGATCCAATGTTGTAGGCCAGTGAAACTAGGGCATCGAA 442 Query 11187 TTGATTTTGATTTAATGGTACAGTAACTAACTTATTAACAG-CAGATACAAATACTTTTA 11245 ||||||||| | | ||| || | ||| |||| |||| | | | ||||| |||||| Sbjct 441 CTGATTTTGACTGACTGGAACTTTGACTGCACTATTTACAGTCTGCT-CAAATGCTTTTA 383 Query 11246 AATCATTTTTCATATACATTTTAGCCTGGGCTTCGGTGCATACATCGCCTTTGGTAACAC 11305 || || | |||||| ||| ||||| | ||||| ||| ||||| | |||| Sbjct 382 GGTCGTTCTGCATATAAGCTTTGGCCTGATCCAGTGTGCAGGTATCCCCTTTTTTGACAC 323 Query 11306 GTTTACCACTTGGATATTTAATTGTCCCGTATCCAATAGTCCAAACATTAACACTATCGA 11365 || | ||| |||| ||||| | || || || ||||||||||| ||| |||| ||| Sbjct 322 GTATGCCATTTGGGTATTTTGTGGTGCCATAACCAATAGTCCATACACCTACACCATCAT 263 Query 11366 GATATGCACTTGTACGTAAGCCTTCAAAACCTCGAATTAAATCAACACCA 11415 ||| || | || | |||||||||| | || | ||||||||| Sbjct 262 CATAGGCTTTCAGTCGCAGGCCTTCAAAATTGCAGATCAGGTCAACACCA 213 >seq1760 Length=1669 Score = 98.7 bits (108), Expect = 1e-15 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 75945 TGGTGGGCCTCCCCAGACTTGAACTGGGAACCAACGGATTATGAGTCCGCTGCTCTAACC 76004 ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 665 TGGTGGGCCCAGACAGACTTGAACTGTCGACCAACGGATTATGAGTCCGCTGCTCTAACC 606 Query 76005 AATTGAGCTAAAGGCCC 76021 || ||||||| |||||| Sbjct 605 AACTGAGCTATAGGCCC 589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 533215819774560