Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq5761 154 1e-32 seq7010 149 5e-31 seq6955 149 5e-31 >seq5761 Length=8615 Score = 154 bits (170), Expect = 1e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| || | | || ||||||||||| ||||| || || || ||||| |||| Sbjct 325 CCTCCTCTCAATCTGAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAT 266 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| ||||| |||||||| || || ||||||||||| |||||||| || Sbjct 265 AGGGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGCTGCTGATCGGGAGGT 206 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| || || |||||||| ||||||| |||| | ||||| || | || || Sbjct 205 ATGCCTTCCTTGTCCTGAATTTTCGCTTTTACATTTTCGATGGTGTCTGATGGCTCGACC 146 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGT 101472 ||||| |||| || || || || | |||||| || || || ||||| || Sbjct 145 TCAAGGGTGATGGTCTTACCAGTGAGAGTTTTCACGAAAATTTGCATCGT 96 >seq7010 Length=35453 Score = 149 bits (164), Expect = 5e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| || | | || || |||||||| ||||| || || || ||||| |||| Sbjct 8680 CCTCCTCTCAATCTGAGCACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAT 8739 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| ||||| |||||||| || || ||||||||||| |||||||| || Sbjct 8740 AGGGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGCTGCTGATCGGGAGGT 8799 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| || || |||||||| ||||||| |||| | ||||| || | || || Sbjct 8800 ATGCCTTCCTTGTCCTGAATTTTCGCTTTTACATTTTCGATGGTGTCTGATGGCTCGACC 8859 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGT 101472 ||||| |||| || || || || | |||||| || || || ||||| || Sbjct 8860 TCAAGGGTGATGGTCTTACCAGTGAGAGTTTTCACGAAAATTTGCATCGT 8909 >seq6955 Length=469295 Score = 149 bits (164), Expect = 5e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| | || ||||| || ||||| ||||| ||||| || || ||||| |||| Sbjct 94410 CCTCCTCTCAGCCGCAAAACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCGGAA 94351 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | |||| ||||||||||| || || || || | |||||| || || || || Sbjct 94350 AGAGTGCGTCCATCTTCCAATTGCTTTCCAGCGAAAATGAGACGCTGCTGGTCTGGGGGG 94291 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || |||||||| || || ||||| || ||| | || | ||||| || | ||||||| Sbjct 94290 ATTCCTTCTTTGTCCTGGATTTTAGCCTTAACATTCTCGATTGTGTCTGAAGGTTCCACT 94231 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | ||||| ||||| || ||||| ||||| || || |||||||| Sbjct 94230 TCCAAAGTGATGGTTTTTCCAGTTAATGTTTTCACGAAGATCTGCAT 94184 Score = 143 bits (158), Expect = 2e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| ||||| || | || || ||||| || || ||||||||||| || || ||||| | Sbjct 94640 TTCCACCTCTCAATCTCAACACCAAATGCAGAGTGGATTCTTTTTGGATGTTATAATCTG 94581 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | || | | |||| ||||| || || || || || ||||| || ||||| || || | Sbjct 94580 ATAGGGTGCGGCCATCTTCCAACTGTTTGCCAGCGAAAATCAATCGTTGTTGGTCTGGGG 94521 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| ||||| || |||||||| || ||| || | || | |||||| || | ||| | Sbjct 94520 GAATTCCTTCCTTGTCTTGAATCTTGGCTTTAACGTTCTCAATAGTGTCTGATGGTTCAA 94461 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | ||||| |||| |||||||| || ||||| || || || |||||||| Sbjct 94460 CCTCAAGTGTGATAGTTTTGCCAGTCAAAGTCTTCACGAAAATCTGCAT 94412 Score = 143 bits (158), Expect = 2e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||| || || | || || ||||| | || || || ||||| || ||||| || | Sbjct 95096 TTCCTCCCCTCAATCTCAACACCAAATGCAAAGTGGACTCCTTTTGAATGTTGTAGTCAG 95037 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | ||| | |||| ||||| ||||| |||||||| ||||| | ||| || || || | Sbjct 95036 ATAAAGTGCGTCCATCCTCCAACTGCTTTCCTGCAAAGATCAATCTCTGCTGGTCTGGGG 94977 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||||||||| || ||||| || || || || | || | ||||| || | ||||| Sbjct 94976 GAATGCCTTCCTTGTCTTGGATCTTCGCCTTAACGTTCTCAATTGTGTCTGAGGGTTCCA 94917 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||| | ||| | ||||||||||||||||||||| || || || ||||| Sbjct 94916 CTTCCAAAGTAATCGTTTTGCCGGTTAAAGTTTTCACGAAGATTTGCAT 94868 Score = 138 bits (152), Expect = 9e-28 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||||||||| || | | || || ||||| || ||||| || ||||| |||||||| | Sbjct 95780 TTCCTCCTCTCAACCTGAGCACCAAGTGAAGAGTGGATTCCTTCTGTATGTTGTAATCCG 95721 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | ||| | | | || |||||||| || ||||| || ||||| | ||| || || || | Sbjct 95720 ATAAAGTGCGGCCGTCTTCCAATTGTTTGCCTGCGAAAATCAACCTCTGCTGGTCTGGAG 95661 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 ||||||||||||| || || || || ||| ||| | || | ||||| || | ||||| Sbjct 95660 GAATGCCTTCTTTGTCCTGGATCTTAGCTTTAACATTCTCGATGGTGTCTGAGGGTTCCA 95601 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||| | ||||| ||||| || || | ||||| || || || ||||| Sbjct 95600 CTTCCAAAGTGATAGTTTTTCCAGTCAGGGTTTTCACGAAAATTTGCAT 95552 Score = 131 bits (144), Expect = 1e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 101273 GTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCT 101332 || ||||||||||| || || ||||| | | || | | |||| |||||||| || ||| Sbjct 95976 GTGGATTCTTTTTGGATGTTATAATCTGATAGGGTGCGGCCATCTTCCAATTGTTTGCCT 95917 Query 101333 GCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTT 101392 || || |||| | |||||| || || ||||| ||||| || || || || ||| || Sbjct 95916 GCGAAAATCAGTCTCTGTTGGTCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTGCCTTA 95857 Query 101393 ACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTT 101452 ||| |||| | || ||||| | ||| |||||||| || | |||||||| || | |||| Sbjct 95856 ACATTTTCGATGGTATCAGATGGTTCGACTTCAAGTGTAATAGTTTTGCCAGTCAGAGTT 95797 Query 101453 TTTACAAATATCTGCAT 101469 || ||||| |||||||| Sbjct 95796 TTAACAAAAATCTGCAT 95780 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||||||||| | | ||||| ||||| | || |||||||| || || ||||| || | Sbjct 94868 TTCCTCCTCTCAGTCTCAAAACCAAATGTAAAGTGGATTCTTTCTGGATGTTGTAGTCAG 94809 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | || | |||| || || || || || ||||| || || | |||||| || || | Sbjct 94808 ACAATGTACGTCCATCTTCTAACTGTTTGCCGGCAAAAATTAACCTCTGTTGGTCTGGAG 94749 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| ||||| || || ||||| || ||| ||| |||| | || ||||| | ||| | Sbjct 94748 GAATTCCTTCCTTGTCCTGAATCTTGGCTTTAACATTTTCAATGGTATCAGATGGTTCGA 94689 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||||| || | |||||||| || | ||||||||||| || ||||| Sbjct 94688 CTTCAAGTGTAATTGTTTTGCCAGTAAGGGTTTTTACAAAAATTTGCAT 94640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396238854883116