Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq6955 125 5e-24 seq5761 107 1e-18 seq7453 104 2e-17 seq7010 102 6e-17 seq6233 100 2e-16 seq1586 100 2e-16 >seq6955 Length=469295 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| | | |||||||||||| | ||| ||| |||||||| ||||| |||||| Sbjct 95094 CCTCCCCTCAATCTCAACACCAAATGCAAAGTGGACTCCTTTTGAATGTTGTAGTCAGAT 95035 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | | || | || ||||||||||| || ||||| |||| || ||| || || | |||| Sbjct 95034 AAAGTGCGTCCATCCTCCAACTGCTTTCCTGCAAAGATCAATCTCTGCTGGTCTGGGGGA 94975 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||| |||||||| ||||| || || | | | ||||| | ||||| Sbjct 94974 ATGCCTTCCTTGTCTTGGATCTTCGCCTTAACGTTCTCAATTGTGTCTGAGGGTTCCACT 94915 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| ||||||||||| || || |||||||| || || || ||||| Sbjct 94914 TCCAAAGTAATCGTTTTGCCGGTTAAAGTTTTCACGAAGATTTGCAT 94868 Score = 120 bits (132), Expect = 2e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 |||||||||||| || ||| |||||||| || || ||||| ||||| | || | || Sbjct 94624 CAACACCAAATGCAGAGTGGATTCTTTTTGGATGTTATAATCTGATAGGGTGCGGCCATC 94565 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 |||||||| || || || || |||| ||| ||||| || | ||||| || |||||||| Sbjct 94564 TTCCAACTGTTTGCCAGCGAAAATCAATCGTTGTTGGTCTGGGGGAATTCCTTCCTTGTC 94505 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 |||||| ||| || | | || ||||| | || ||||| | || || || Sbjct 94504 TTGAATCTTGGCTTTAACGTTCTCAATAGTGTCTGATGGTTCAACCTCAAGTGTGATAGT 94445 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||| || |||||||| || || |||||||||||| Sbjct 94444 TTTGCCAGTCAAAGTCTTCACGAAAATCTGCATC 94411 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48557 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTC 48616 |||||| || || ||| || || || || ||||||||||| | | |||| |||| || Sbjct 95305 CACCAAGTGAAGAGTGGATTCCTTCTGGATGTTGTAATCAGACAAAGTTCGGCCGTCTTC 95246 Query 48617 CAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCT 48676 ||| || || || || || ||||||| |||||| || | ||||| || || ||||| Sbjct 95245 CAATTGTTTTCCTGCGAAAATCAGTCTCTGTTGGTCTGGGGGAATTCCTTCTTTGTCCTG 95186 Query 48677 AATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTT 48736 ||||| ||| ||| | | || || || | ||| || || | ||||| ||||| Sbjct 95185 GATCTTGGCTTTAACATTTTCAATAGTATCAGAAGGCTCGACTTCAAGTGTAATGGTTTT 95126 Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| || | |||||| |||||||| ||||| Sbjct 95125 TCCAGTAAGAGTTTTGACAAAAATTTGCAT 95096 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || |||| | |||||| || || ||| || ||||| || ||||| || || Sbjct 95550 CCTCCTCTCAGCCTGAGCACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCGGAA 95491 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || | || ||||||||||| || ||||| || || ||||| || || | ||| Sbjct 95490 AGTGTGCGGCCATCCTCCAACTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGGGGG 95431 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||| |||||||| ||||| ||| || | | | ||||| || ||||| Sbjct 95430 ATGCCTTCCTTGTCTTGGATCTTAGCTTTAACGTTTTCGATGGTATCTGAGGCTTCCACT 95371 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || |||||||| |||| ||||| ||||| || ||||| Sbjct 95370 TCCAAAGTGATGGTTTTTCCAGTCAGGGTTTTAACAAAGATTTGCAT 95324 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 |||||||| || || ||||| ||||| | || | || ||||| || || || || || Sbjct 95970 TCTTTTTGGATGTTATAATCTGATAGGGTGCGGCCATCTTCCAATTGTTTGCCTGCGAAA 95911 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 ||||||| |||||| || | |||| || |||||||| |||||| || ||| Sbjct 95910 ATCAGTCTCTGTTGGTCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTGCCTTAACATTT 95851 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || | || || || | ||||| ||||| || |||| |||||| ||| Sbjct 95850 TCGATGGTATCAGATGGTTCGACTTCAAGTGTAATAGTTTTGCCAGTCAGAGTTTTAACA 95791 Query 48756 AAAATCTGCAT 48766 ||||||||||| Sbjct 95790 AAAATCTGCAT 95780 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || | ||| |||||||||| ||| ||||| || || ||||| ||||| Sbjct 94866 CCTCCTCTCAGTCTCAAAACCAAATGTAAAGTGGATTCTTTCTGGATGTTGTAGTCAGAC 94807 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | || | || || ||||| || |||||||| || | | |||||| || | ||| Sbjct 94806 AATGTACGTCCATCTTCTAACTGTTTGCCGGCAAAAATTAACCTCTGTTGGTCTGGAGGA 94747 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || |||||||| |||||| ||| ||| | | | || || | || || Sbjct 94746 ATTCCTTCCTTGTCCTGAATCTTGGCTTTAACATTTTCAATGGTATCAGATGGTTCGACT 94687 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | ||||| ||||| || || | |||||||||||||| ||||| Sbjct 94686 TCAAGTGTAATTGTTTTGCCAGTAAGGGTTTTTACAAAAATTTGCAT 94640 >seq5761 Length=8615 Score = 107 bits (118), Expect = 1e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 48557 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTC 48616 ||||||||| || ||| || || || || ||||| || ||||| | || | || || Sbjct 308 CACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGATAGGGTACGTCCATCTTC 249 Query 48617 CAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCT 48676 |||||||||||| || || |||| ||||| ||||| | || | ||| |||||||| Sbjct 248 CAACTGCTTACCAGCGAAGATCAAACGCTGCTGATCGGGAGGTATGCCTTCCTTGTCCTG 189 Query 48677 AATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTT 48736 ||| || ||||||| | | | ||||| | ||| ||||| | || || || || Sbjct 188 AATTTTCGCTTTTACATTTTCGATGGTGTCTGATGGCTCGACCTCAAGGGTGATGGTCTT 129 Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || || | |||||| || ||||| ||||||||| Sbjct 128 ACCAGTGAGAGTTTTCACGAAAATTTGCATCGTG 95 >seq7453 Length=213858 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 |||| ||||| | || |||||||||||| | ||| ||| || || || ||||| || | Sbjct 107662 CGCCTCCCCTCAACCTCAACACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCCG 107721 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 | | | | || | || |||| |||||| ||||| || ||||| ||||| || || | | Sbjct 107722 ACAAAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCGGGAG 107781 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 | | |||||| || || || || ||| ||| | | || ||||| | ||| | Sbjct 107782 GGATGCCCTCTTTATCCTGGATTTTGGCTTTAACATTTTCGATAGTATCTGATGGCTCGA 107841 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 |||| | || || || || ||||||| ||| || || || ||||||||| Sbjct 107842 CCTCAAGAGTGATGGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCATC 107891 >seq7010 Length=35453 Score = 102 bits (112), Expect = 6e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 48557 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTC 48616 |||||| || || ||| || || || || ||||| || ||||| | || | || || Sbjct 8697 CACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGATAGGGTACGTCCATCTTC 8756 Query 48617 CAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCT 48676 |||||||||||| || || |||| ||||| ||||| | || | ||| |||||||| Sbjct 8757 CAACTGCTTACCAGCGAAGATCAAACGCTGCTGATCGGGAGGTATGCCTTCCTTGTCCTG 8816 Query 48677 AATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTT 48736 ||| || ||||||| | | | ||||| | ||| ||||| | || || || || Sbjct 8817 AATTTTCGCTTTTACATTTTCGATGGTGTCTGATGGCTCGACCTCAAGGGTGATGGTCTT 8876 Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || || | |||||| || ||||| ||||||||| Sbjct 8877 ACCAGTGAGAGTTTTCACGAAAATTTGCATCGTG 8910 >seq6233 Length=1575 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 |||| ||||| | || |||||||||||| | ||| ||| || || || || || || | Sbjct 642 CGCCTCCCCTCAACCTCAACACCAAATGCAAAGTGGACTCCTTCTGGATGTTATAGTCCG 583 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 | | | | || | || |||| |||||| ||||| || ||||| ||||| || || | | Sbjct 582 ACAAAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCGGGAG 523 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 | | |||||| ||||| || || ||| ||| | | | ||||| | ||| | Sbjct 522 GGATGCCCTCTTTGTCCTGGATTTTGGCTTTAACATTTTCGATGGTATCTGATGGCTCGA 463 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 |||| | || || || || ||||||| ||| || || || ||||||||| Sbjct 462 CCTCAAGAGTGATGGTCTTCCCCGTCAGAGTCTTCACGAAGATCTGCATC 413 >seq1586 Length=2413 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 |||| ||||| | || |||||||||||| | ||| ||| || || || || || || | Sbjct 2080 CGCCTCCCCTCAACCTCAACACCAAATGCAAAGTGGACTCCTTCTGGATGTTATAGTCCG 2021 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 | | | | || | || |||| |||||| ||||| || ||||| ||||| || || | | Sbjct 2020 ACAAAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCGGGAG 1961 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 | | |||||| ||||| || || ||| ||| | | | ||||| | ||| | Sbjct 1960 GGATGCCCTCTTTGTCCTGGATTTTGGCTTTAACATTTTCGATGGTATCTGATGGCTCGA 1901 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 |||| | || || || || ||||||| ||| || || || ||||||||| Sbjct 1900 CCTCAAGAGTGATGGTCTTCCCCGTCAGAGTCTTCACGAAGATCTGCATC 1851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380899585760724