Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq7343 131 3e-25 seq7149 84.2 4e-11 >seq7343 Length=933009 Score = 131 bits (144), Expect = 3e-25 Identities = 369/564 (65%), Gaps = 2/564 (0%) Strand=Plus/Minus Query 48131 CAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGA 48190 ||||||||||| | ||||| |||||||| | | ||| || | || || || || Sbjct 374984 CAGGCAAAGTCACAATGCAATCCTTCGTCTCTGGAGATCAGTTCATTTGAAAATGTCAGG 374925 Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250 || ||||| | || | | || |||||||| || | || || ||||||||| || Sbjct 374924 CCGGGCATCAAGCCGCGTTTCTTAAGCCAGAAGATCGAAGCAAAGCTGCCAGAGAAAAAT 374865 Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAG 48310 || || || || || ||||| ||| || |||||||| || | | ||||| | Sbjct 374864 ATTCCTTCGACAGCTGCGAAAGCGACGATTCTCTCTCCAAATGTGGACGTCTTGGAGCTG 374805 Query 48311 ATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGG 48370 ||||| |||||||||||| || ||| || | | || || | || || || || Sbjct 374804 ATCCACTTAAGCGCCCAGTCCGCTTTCCTCCTTACACAGGGAAGTGTTTCAATTGCGTTA 374745 Query 48371 AAGA-GCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACAT 48429 || | | ||| || | | | || | ||||| | |||| | |||||| Sbjct 374744 AACAAGAAACTTTT-CTGAACAGGATCGCTGATGTAGGTCTCAATCAGCATGCTGTACAT 374686 Query 48430 CTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACAC 48489 |||||||| | ||| || || || || || ||||| ||||| || ||||| || Sbjct 374685 TTCAGAGTGAATATTTTCGATGGCTATTTGAAACCCATAGAAACATCTAGCCTCGGTTAC 374626 Query 48490 CTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGC 48549 |||||||| | ||||| |||| ||||| || || || || ||||| || || || Sbjct 374625 TTGCACTTCCTGGCTGAATCGTTCCACAAGATTTTCGTTCACAATGCCATCAGATGCTGC 374566 Query 48550 AAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCC 48609 || ||||| || ||||| | ||| || | || |||| || || |||||| Sbjct 374565 GAAAAAGGCCAGCACATGCGATATGAAGTGCCTTTCATTGTTTGTCAGCTTATTCCAATG 374506 Query 48610 CTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTT 48669 | | ||||| ||||||||||||||| ||||| || || || ||||| || Sbjct 374505 ATCGAGGTCTTGAGATAGGTCCACTTCTTCCGTGGTCCAAAACGAGGCTTCCGCTTTCTT 374446 Query 48670 GTACATGCCCCATATGTCCGGATA 48693 |||| | |||| ||||| ||||| Sbjct 374445 GTACTTTTCCCAGATGTCTGGATA 374422 >seq7149 Length=218332 Score = 84.2 bits (92), Expect = 4e-11 Identities = 109/148 (74%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 213494 GGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAG 213553 |||||| ||||||||||| | || | | ||||| || | ||| || ||||| || Sbjct 123059 GGCCAGATTGCAAACGGCGATTTCATCGGCTGAAGTGTATTCAACGATTTCCGTGCAAAG 123000 Query 213554 GTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAA-TCCT 213612 ||||||| || ||||||||||||| ||||| || |||||| | |||| || | Sbjct 122999 ATTGCTGCTCTTTATCGTGCCCAGGTTCTTCTGGTTGGA-TTTGCGGTTGCAGGCGTCTT 122941 Query 213613 TGTAGAGCATGTAGGGGGACCCGGTCTC 213640 |||| ||||||||||| | |||||| || Sbjct 122940 TGTACAGCATGTAGGGCGTCCCGGTTTC 122913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931437457617920